Expressing an association between an organism taxon and a gene (explore)

Expressing an association between an organism taxon and a gene

Full identifier: http://purl.org/np/RAQcn-NHXcqWvEsguTCnFspUqCBBbzQis2KafZf3IDMpk

Status

Nanopublication

Expressing an association between an organism taxon and a gene AssertionTemplate comment approve/disapprove edit as derived nanopublication create new with same template use template

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAQcn-NHXc...#assertion This assertion http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/AssertionTemplate AssertionTemplate .

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAQcn-NHXc...#assertion This assertion http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"Expressing an association between an organism taxon and a gene"

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAQcn-NHXc...#assertion This assertion http://purl.org/dc/terms/description has the description (this is a literal)

"Such a nanopublication expresses an association between an organism taxon (e.g. a species) and a gene."

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAQcn-NHXc...#assertion This assertion https://w3id.org/np/o/ntemplate/hasTag has tag (this is a literal)

"Biodiversity"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st0

st0

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st0

st0

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/1999/02/22-rdf-syntax-ns#type

is a

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st0

st0

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object https://w3id.org/kpxl/biodiv/terms/OrganismTaxonToGeneAssociation

OrganismTaxonToGeneAssociation

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st1

st1

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st1

st1

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/subject

subject

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st1

st1

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#taxon

taxon

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st2

st2

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st2

st2

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage

hasSubjectLifeCycleStage

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st2

st2

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#lifecyclestage

lifecyclestage

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st3

st3

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st3

st3

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/predicate

predicate

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st3

st3

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#relation

relation

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st4

st4

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st4

st4

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/object

object

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st4

st4

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#gene

gene

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAQcn-NHXc...#assertion This assertion https://w3id.org/np/o/ntemplate/hasStatement includes This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st0

st0

st1

st2

st3

st4

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#st2

st2

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#association

association

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/IntroducedResource

Introduced resource

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#association

association

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LocalResource

Local resource

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#gene

gene

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder

Guided choice placeholder

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#lifecyclestage

lifecyclestage

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder

Guided choice placeholder

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#relation

relation

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder

Guided choice placeholder

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#taxon

taxon

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder

Guided choice placeholder

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#relation

relation

https://w3id.org/np/o/ntemplate/possibleValue has as possible value http://purl.obolibrary.org/obo/RO_0001019

RO_0001019

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#gene

gene

https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal)

"https://www.ebi.ac.uk/ols/api/select?ontology=ogg&fieldList=iri,label,description&q="

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#lifecyclestage

lifecyclestage

https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal)

"https://www.ebi.ac.uk/ols/api/select?ontology=uberon&fieldList=iri,label,description&childrenOf=http://purl.obolibrary.org/obo/UBERON_0000105&q="

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#relation

relation

https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal)

"https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q="

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#taxon

taxon

https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal)

"https://vodex.petapico.org/nidx/query?rows=100&q=label:"

http://purl.obolibrary.org/obo/RO_0001019

RO_0001019

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"contains"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#association

association

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"this association"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#gene

gene

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"the gene to be associated with the taxon"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#lifecyclestage

lifecyclestage

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"the life cycle stage"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#relation

relation

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"the type of relation between the taxon and the gene"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#taxon

taxon

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"the organism taxon, e.g. a species"

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

is a

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"is a"

https://w3id.org/biolink/vocab/object

object

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"refers to the gene"

https://w3id.org/biolink/vocab/predicate

predicate

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"refers to the relation (between taxon and gene)"

https://w3id.org/biolink/vocab/subject

subject

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"refers to the organism taxon"

https://w3id.org/kpxl/biodiv/terms/OrganismTaxonToGeneAssociation

OrganismTaxonToGeneAssociation

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"association of an organism taxon to an environment"

https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage

hasSubjectLifeCycleStage

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"refers to the taxon's life cycle stage"

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAQcn-NHXc...#assertion The assertion above http://www.w3.org/ns/prov#wasAttributedTo is attributed to https://orcid.org/0000-0002-1267-0234

Tobias Kuhn

This is the identifier for this whole nanopublication. http://purl.org/np/RAQcn-NHXc... This nanopublication http://purl.org/dc/terms/creator is created by https://orcid.org/0000-0002-1267-0234

Tobias Kuhn

This is the identifier for this whole nanopublication. http://purl.org/np/RAQcn-NHXc... This nanopublication http://purl.org/nanopub/x/supersedes supersedes http://purl.org/np/RAl6ML-bke...

RAl6ML-bke

This is the identifier for this whole nanopublication. http://purl.org/np/RAQcn-NHXc... This nanopublication date and time when the nanopublication was created http://purl.org/dc/terms/created was created on (this is a literal)

"2023-05-24T07:58:25.506Z"

(xsd:dateTime) .

This is the identifier for this whole nanopublication. http://purl.org/np/RAQcn-NHXc... This nanopublication links to the assertion template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate was created from the assertion template http://purl.org/np/RAkONP_jLq...

RAkONP_jLq

This is the identifier for this whole nanopublication. http://purl.org/np/RAQcn-NHXc... This nanopublication links to the provenance template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate was created from the provenance template http://purl.org/np/RANwQa4ICW...

RANwQa4ICW

This is the identifier for this whole nanopublication. http://purl.org/np/RAQcn-NHXc... This nanopublication links to the publication info template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate was created from the publication info template http://purl.org/np/RAA2MfqdBC...

RAA2MfqdBC

RAjpBMlw3o

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#sig

sig

http://purl.org/nanopub/x/hasSignatureTarget has as target This is the identifier for this whole nanopublication. http://purl.org/np/RAQcn-NHXc... this nanopublication .

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#sig

sig

http://purl.org/nanopub/x/hasAlgorithm has the algorithm (this is a literal)

"RSA"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#sig

sig

http://purl.org/nanopub/x/hasPublicKey has the public key (this is a literal)

"MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAQcn-NHXc...#sig

sig

http://purl.org/nanopub/x/hasSignature has the signature (this is a literal)

"YMztdLfel6lnpLawjRqPKVfFebvvSjzIDmPfdyk9lPb/DTf8ha6fj2VuFdLTmQZSyaL+UvUggUxDasJG5V5fg4TO/r/7fXo6GEluKvq37fgpWDahm/mFTuhmgokM1KZR/+Cwm0QUE2pf8CzN4xAL8ET4R8lsysqp2YwFF2JSey0="

Tobias Kuhn, 24 May 2023, 07:58:25 UTC

References

Nanopublication	Part	Subject	Predicate	Object	Published By	Published On
https://w3id.org/np/RAXwuoW8Kq... RAXwuoW8Kq	links a nanopublication to its pubinfo http://www.nanopub.org/nschema#hasPublicationInfo pubinfo	https://w3id.org/np/RAXwuoW8Kq... RAXwuoW8Kq	http://purl.org/nanopub/x/supersedes supersedes	RAQcn-NHXc	Tobias Kuhn	2024-02-06T19:51:25.878Z
https://w3id.org/np/RAxvh4t8yo... RAxvh4t8yo	links a nanopublication to its pubinfo http://www.nanopub.org/nschema#hasPublicationInfo pubinfo	https://w3id.org/np/RAxvh4t8yo... RAxvh4t8yo	http://www.w3.org/ns/prov#wasDerivedFrom wasDerivedFrom	RAQcn-NHXc	Pierre-Marie Allard	2024-02-06T14:01:06.166Z
http://purl.org/np/RArCW84nAU... RArCW84nAU	links a nanopublication to its pubinfo http://www.nanopub.org/nschema#hasPublicationInfo pubinfo	http://purl.org/np/RArCW84nAU... RArCW84nAU	https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate wasCreatedFromTemplate	RAQcn-NHXc	Tobias Kuhn	2023-05-24T08:06:59.410Z

Raw

TriG(txt), JSON-LD(txt), N-Quads(txt), XML(txt)