Template: Expressing an association between a taxon and a nucleotide sequence (explore)

Template: Expressing an association between a taxon and a nucleotide sequence

Full identifier: http://purl.org/np/RAAcvfFgDFl4Q-MSH3XEMjUxipfgY6SyjS9MfwPTP7NuY

Status

Nanopublication

Template: Expressing an association between a taxon and a nucleotide sequence AssertionTemplate comment approve/disapprove edit as derived nanopublication create new with same template use template

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion This assertion http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/AssertionTemplate assertion template .

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion This assertion http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"Expressing an association between a taxon and a nucleotide sequence"

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion This assertion http://purl.org/dc/terms/description has the description (this is a literal)

Such a nanopublication expresses an association between an organism taxon and a nucleotide sequence (that can correspond to a gene or subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies a given taxon concept.

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion This assertion https://w3id.org/np/o/ntemplate/hasTag has tag (this is a literal)

"Biodiversity"

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion This assertion https://w3id.org/np/o/ntemplate/hasDefaultProvenance has default provenance http://purl.org/np/RA2VjRiJ5A...

RA2VjRiJ5A

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion This assertion https://w3id.org/np/o/ntemplate/hasTargetNanopubType has the target nanopub type https://w3id.org/kpxl/biodiv/terms/BiodivNanopub

BiodivNanopub

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion This assertion assigns a pattern used to generate a human-readable label for the whole nanopublication https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern has the nanopub label pattern (this is a literal)

"${taxonname} - is identified by nucleotide sequence - ${nucleotidesequence}"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st00

st00

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st00

st00

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/1999/02/22-rdf-syntax-ns#type

is a

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st00

st00

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object https://w3id.org/kpxl/biodiv/t...oNucleotideSequenceAssociation

OrganismTaxonToNucleotideSequenceAssociation

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st05

st05

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st05

st05

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/predicate

predicate

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st05

st05

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence

isIdentifiedByNuceotideSequence

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st09

st09

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st09

st09

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/subject

subject

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st09

st09

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxon

taxon

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st11

st11

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxon

taxon

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st11

st11

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasTaxonName

hasTaxonName

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st11

st11

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxonname

taxonname

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st12

st12

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxon

taxon

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st12

st12

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition

hasTaxonConceptDefinition

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st12

st12

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxondef

taxondef

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st39

st39

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#association

association

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st39

st39

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/object

object

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st39

st39

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#nucleotidesequence

nucleotidesequence

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st90

st90

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject https://w3id.org/np/o/ntemplate/ASSERTION

ASSERTION

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st90

st90

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/2000/01/rdf-schema#comment

comment

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st90

st90

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#comment

comment

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion This assertion https://w3id.org/np/o/ntemplate/hasStatement includes This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st00

st00

st05

st09

st11

st12

st39

st90

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st12

st12

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#st90

st90

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#association

association

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/IntroducedResource

Introduced resource

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#association

association

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LocalResource

Local resource

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#comment

comment

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LongLiteralPlaceholder

Long literal placeholder

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#nucleotidesequence

nucleotidesequence

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder

External URI placeholder

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxon

taxon

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LocalResource

Local resource

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxondef

taxondef

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder

External URI placeholder

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxonname

taxonname

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder

Guided choice placeholder

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxonname

taxonname

https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal)

"https://vodex.petapico.org/nidx/query?rows=100&q=label:"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#association

association

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"this association"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#comment

comment

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"short explanation related to the above statement"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#nucleotidesequence

nucleotidesequence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"INSDC / Genbank accession number (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...)"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxon

taxon

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"the taxon concept"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxondef

taxondef

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxonname

taxonname

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)"

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

is a

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"is an instance of"

http://www.w3.org/2000/01/rdf-schema#comment

comment

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the free-text comment"

https://w3id.org/biolink/vocab/object

object

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"links the organism to the nucleotide sequence"

https://w3id.org/biolink/vocab/predicate

predicate

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"refers to the relation"

https://w3id.org/biolink/vocab/subject

subject

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"refers to"

https://w3id.org/kpxl/biodiv/t...oNucleotideSequenceAssociation

OrganismTaxonToNucleotideSequenceAssociation

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"association of a taxon to a nucleotide sequence"

https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition

hasTaxonConceptDefinition

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"is used as defined in"

https://w3id.org/kpxl/biodiv/terms/hasTaxonName

hasTaxonName

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the name - links a taxon usage to a taxon name"

https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence

isIdentifiedByNuceotideSequence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"'is identified by nucleotide sequence'"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#taxondef

taxondef

https://w3id.org/np/o/ntemplate/hasRegex has regular expression (this is a literal)

"(https://doi.org/|https://treatment.plazi.org/id/).+"

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RAAcvfFgDF...#assertion The assertion above http://www.w3.org/ns/prov#wasAttributedTo is attributed to https://orcid.org/0000-0002-1267-0234

me (Tobias Kuhn)

This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... This nanopublication http://purl.org/dc/terms/creator is created by https://orcid.org/0000-0002-1267-0234

me (Tobias Kuhn)

This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... This nanopublication http://purl.org/dc/terms/license is published under the license https://creativecommons.org/licenses/by/4.0/

Attribution 4.0 International (CC BY 4.0)

This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... This nanopublication http://purl.org/nanopub/x/supersedes supersedes http://purl.org/np/RAzVvsVUeN...

RAzVvsVUeN

This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... This nanopublication http://www.w3.org/2000/01/rdf-schema#label has the label (this is a literal)

"Template: Expressing an association between a taxon and a nucleotide sequence"

This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... This nanopublication date and time when the nanopublication was created http://purl.org/dc/terms/created was created on (this is a literal)

"2023-08-23T10:58:18.100Z"

(xsd:dateTime) .

This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... This nanopublication links to the assertion template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate was created from the assertion template http://purl.org/np/RAJwu5sVub...

RAJwu5sVub

This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... This nanopublication links to the provenance template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate was created from the provenance template http://purl.org/np/RANwQa4ICW...

RANwQa4ICW

This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... This nanopublication links to the publication info template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate was created from the publication info template http://purl.org/np/RAA2MfqdBC...

RAA2MfqdBC

RAh1gm83Ji

RAjpBMlw3o

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#sig

sig

http://purl.org/nanopub/x/hasSignatureTarget has as target This is the identifier for this whole nanopublication. http://purl.org/np/RAAcvfFgDF... this nanopublication .

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#sig

sig

http://purl.org/nanopub/x/hasAlgorithm has the algorithm (this is a literal)

"RSA"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#sig

sig

http://purl.org/nanopub/x/hasPublicKey has the public key (this is a literal)

"MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB"

This is a local identifier minted within the nanopublication. http://purl.org/np/RAAcvfFgDF...#sig

sig

http://purl.org/nanopub/x/hasSignature has the signature (this is a literal)

"LDGYWZySFurz4agJtEviux+cCHUwYnm1OG4Z5AKEXRF/flym8BPT2uOFBrJ4TFneWCiwhLiDMMDwKQk1By6opXkugnjoOepHTjQrCRbr5yqhcxII7Pz71sleV5bt954KTcCBqeI7ZhkhRPvzOAJDXjGijcLcXDk4DfzL4S4tMGM="

Tobias Kuhn, 23 Aug 2023, 10:58:18 UTC

use this template

References

Nanopublication	Part	Subject	Predicate	Object	Published By	Published On
http://purl.org/np/RAkcattaN_... RAkcattaN_	links a nanopublication to its pubinfo http://www.nanopub.org/nschema#hasPublicationInfo pubinfo	http://purl.org/np/RAkcattaN_... RAkcattaN_	https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate wasCreatedFromTemplate	RAAcvfFgDF	Tobias Kuhn	2023-08-23T11:56:01.377Z

Raw

TriG(txt), JSON-LD(txt), N-Quads(txt), XML(txt)