Linking a taxon to a habitat (Biolink/nidx/Uberon/RO/Checklistbank version) (explore)

Linking a taxon to a habitat (Biolink/nidx/Uberon/RO/Checklistbank version)

Full identifier: http://purl.org/np/RA57qEHE3UdraW-wcoI4rsidhB0Fbw4rl31LrsKC9AWIU

Status

Nanopublication

Linking a taxon to a habitat (Biolink/nidx/Uberon/RO/Checklistbank version) AssertionTemplate comment approve/disapprove edit as derived nanopublication create new with same template use template

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RA57qEHE3U...#assertion This assertion http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/AssertionTemplate AssertionTemplate .

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RA57qEHE3U...#assertion This assertion http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "Linking a taxon to a habitat (Biolink/nidx/Uberon/RO/Checklistbank version)" .

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RA57qEHE3U...#assertion This assertion http://purl.org/dc/terms/description has the description (this is a literal)

This just a preliminary template for testing...

It uses Biolink for the overall structure.

The subject is a taxon as extracted from Checklistbank.

The life cyle stage is from Uberon.

The predicate is from the Relation Ontology.

The object is a habitat according to the ENVO ontology.

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RA57qEHE3U...#assertion This assertion https://w3id.org/np/o/ntemplate/hasTag has tag (this is a literal) "Biodiversity" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st0 st0 http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#association association .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st0 st0 http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st0 st0 http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation OrganismTaxonToEnvironmentAssociation .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st1 st1 http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#association association .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st1 st1 http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/subject subject .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st1 st1 http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#taxon taxon .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st2 st2 http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#association association .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st2 st2 http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://example.org/lifecyclestage lifecyclestage .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st2 st2 http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#lifecyclestage lifecyclestage .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st3 st3 http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#association association .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st3 st3 http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/predicate predicate .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st3 st3 http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#relation relation .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st4 st4 http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#association association .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st4 st4 http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/object object .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st4 st4 http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#habitat habitat .

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RA57qEHE3U...#assertion This assertion https://w3id.org/np/o/ntemplate/hasStatement includes This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st0 st0 .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#st2 st2 http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement optional statement .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#association association http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/IntroducedResource Introduced resource .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#habitat habitat http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder Guided choice placeholder .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#lifecyclestage lifecyclestage http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder Guided choice placeholder .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#relation relation http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder Guided choice placeholder .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#taxon taxon http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder Guided choice placeholder .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#relation relation https://w3id.org/np/o/ntemplate/possibleValue has as possible value http://purl.obolibrary.org/obo/RO_0002303 RO_0002303 .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#habitat habitat https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal) "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#lifecyclestage lifecyclestage https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal) "https://www.ebi.ac.uk/ols/api/select?ontology=uberon&fieldList=iri,label,description&childrenOf=http://purl.obolibrary.org/obo/UBERON_0000105&q=" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#relation relation https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal) "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#taxon taxon https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal) "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .

http://example.org/lifecyclestage lifecyclestage http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "refers to the life cycle stage (of organisms of the given taxon)" .

http://purl.obolibrary.org/obo/RO_0002303 RO_0002303 http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "has habitat" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#association association http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "this association" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#habitat habitat http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "habitat/environment related to taxon" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#lifecyclestage lifecyclestage http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "identifier of the life cycle stage" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#relation relation http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "identifier of relation" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#taxon taxon http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "identifier of taxon" .

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "is a" .

https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation OrganismTaxonToEnvironmentAssociation http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "association of an organism taxon to an environment" .

https://w3id.org/biolink/vocab/object object http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "refers to the environment" .

https://w3id.org/biolink/vocab/predicate predicate http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "refers to the relation (between taxon and environment)" .

https://w3id.org/biolink/vocab/subject subject http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal) "refers to the organism taxon" .

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RA57qEHE3U...#assertion The assertion above http://www.w3.org/ns/prov#wasAttributedTo is attributed to https://orcid.org/0000-0002-1267-0234 me (Tobias Kuhn) .

This is the identifier for this whole nanopublication. http://purl.org/np/RA57qEHE3U... This nanopublication http://purl.org/dc/terms/creator is created by https://orcid.org/0000-0002-1267-0234 me (Tobias Kuhn) .

This is the identifier for this whole nanopublication. http://purl.org/np/RA57qEHE3U... This nanopublication http://purl.org/nanopub/x/supersedes supersedes http://purl.org/np/RA0dc_S7qx... RA0dc_S7qx .

This is the identifier for this whole nanopublication. http://purl.org/np/RA57qEHE3U... This nanopublication date and time when the nanopublication was created http://purl.org/dc/terms/created was created on (this is a literal) "2023-04-25T13:57:57.316Z" (xsd:dateTime) .

This is the identifier for this whole nanopublication. http://purl.org/np/RA57qEHE3U... This nanopublication links to the assertion template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate was created from the assertion template http://purl.org/np/RAkONP_jLq... RAkONP_jLq .

This is the identifier for this whole nanopublication. http://purl.org/np/RA57qEHE3U... This nanopublication links to the provenance template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate was created from the provenance template http://purl.org/np/RANwQa4ICW... RANwQa4ICW .

This is the identifier for this whole nanopublication. http://purl.org/np/RA57qEHE3U... This nanopublication links to the publication info template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate was created from the publication info template http://purl.org/np/RAA2MfqdBC... RAA2MfqdBC .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#sig sig http://purl.org/nanopub/x/hasSignatureTarget has as target This is the identifier for this whole nanopublication. http://purl.org/np/RA57qEHE3U... this nanopublication .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#sig sig http://purl.org/nanopub/x/hasAlgorithm has the algorithm (this is a literal) "RSA" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#sig sig http://purl.org/nanopub/x/hasPublicKey has the public key (this is a literal) "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB" .

This is a local identifier minted within the nanopublication. http://purl.org/np/RA57qEHE3U...#sig sig http://purl.org/nanopub/x/hasSignature has the signature (this is a literal) "Rws17d/tmXt4X8ETESlHPeQb3ynaE9B+fvcr8qQrPmydPJu0giPopm9V0QEap4dkCZMJXMy03sE7MN5I92/dfA+4T+VUraTNNtwyxeVHEvqHDwri/2gIvsVxRt3kv0h9rqX2mePjAoodk2BvdvNgynEIn0p+OgZEzeReTYfMVx4=" .

Tobias Kuhn, 25 Apr 2023, 13:57:57 UTC

use this template

References

Nanopublication	Part	Subject	Predicate	Object	Published By	Published On
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Raw

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