@prefix this: <http://purl.org/np/RAwy5ZloUugunk3gafYppW6MfZGQXD554XgHfCAFHH08k> .
@prefix sub: <http://purl.org/np/RAwy5ZloUugunk3gafYppW6MfZGQXD554XgHfCAFHH08k#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .

<http://purl.org/np/RAwy5ZloUugunk3gafYppW6MfZGQXD554XgHfCAFHH08k> a np:Nanopublication;
  np:hasAssertion sub:assertion;
  np:hasProvenance sub:provenance;
  np:hasPublicationInfo sub:pubinfo;
  dct:created "2023-09-08T09:14:23.053Z"^^xsd:dateTime;
  dct:creator orcid:0000-0002-1267-0234;
  dct:license <https://creativecommons.org/licenses/by/4.0/>;
  npx:supersedes <http://purl.org/np/RAwxy0G4H7OPOGGzU96AZCFOoEHowqU6RZFwTrv5SUEhI>;
  rdfs:label "Template: Expressing an association between an organism taxon and an environment";
  nt:wasCreatedFromProvenanceTemplate <http://purl.org/np/RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM>;
  nt:wasCreatedFromPubinfoTemplate <http://purl.org/np/RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM>,
    <http://purl.org/np/RAh1gm83JiG5M6kDxXhaYT1l49nCzyrckMvTzcPn-iv90>, <http://purl.org/np/RAjpBMlw3owYhJUBo3DtsuDlXsNAJ8cnGeWAutDVjuAuI>;
  nt:wasCreatedFromTemplate <http://purl.org/np/RAJwu5sVubRqXY4t2gkSoGxWkMyZqnpkGTCPiTlmvi4so> .

<http://purl.obolibrary.org/obo/RO_0002303> rdfs:label "has habitat" .

sub:assertion a nt:AssertionTemplate;
  dct:description "Such a nanopublication expresses an association between an organism taxon (e.g. a species) and an environment, for example expressing that the organisms of the given species inhabit the specified environment.";
  rdfs:label "Expressing an association between an organism taxon and an environment";
  nt:hasDefaultProvenance <http://purl.org/np/RA2VjRiJ5AsNnPHDXuOqvsEJwTwqtj5rBb-OFkpPOzd9s>;
  nt:hasNanopubLabelPattern "${taxonname} - ${relation} - ${environment}";
  nt:hasStatement sub:st00, sub:st05, sub:st10, sub:st11, sub:st12, sub:st20, sub:st40,
    sub:st60;
  nt:hasTag "Biodiversity";
  nt:hasTargetNanopubType <https://w3id.org/kpxl/biodiv/terms/BiodivNanopub>;
  prov:wasAttributedTo orcid:0000-0002-1267-0234 .

sub:association a nt:IntroducedResource, nt:LocalResource;
  rdfs:label "this association" .

sub:comment a nt:LongLiteralPlaceholder;
  rdfs:label "short explanation related to the above statement" .

sub:environment a nt:GuidedChoicePlaceholder;
  rdfs:label "the environment to be associated with the taxon";
  nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" .

sub:lifecyclestage a nt:RestrictedChoicePlaceholder;
  rdfs:label "the life cycle stage";
  nt:possibleValuesFrom <http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE> .

sub:relation a nt:GuidedChoicePlaceholder;
  rdfs:label "the type of relation between the taxon and the environment";
  nt:possibleValue <http://purl.obolibrary.org/obo/RO_0002303>;
  nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .

sub:st00 rdf:object <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation>;
  rdf:predicate rdf:type;
  rdf:subject sub:association .

sub:st05 rdf:object sub:relation;
  rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
  rdf:subject sub:association .

sub:st10 rdf:object sub:taxon;
  rdf:predicate <https://w3id.org/biolink/vocab/subject>;
  rdf:subject sub:association .

sub:st11 rdf:object sub:taxonname;
  rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonName>;
  rdf:subject sub:taxon .

sub:st12 a nt:OptionalStatement;
  rdf:object sub:taxondef;
  rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition>;
  rdf:subject sub:taxon .

sub:st20 a nt:OptionalStatement;
  rdf:object sub:lifecyclestage;
  rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage>;
  rdf:subject sub:association .

sub:st40 rdf:object sub:environment;
  rdf:predicate <https://w3id.org/biolink/vocab/object>;
  rdf:subject sub:association .

sub:st60 a nt:OptionalStatement;
  rdf:object sub:comment;
  rdf:predicate rdfs:comment;
  rdf:subject sub:association .

sub:taxon a nt:LocalResource;
  rdfs:label "a taxon concept" .

sub:taxondef a nt:ExternalUriPlaceholder;
  rdfs:label "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)";
  nt:hasRegex "(https://doi.org/|https://treatment.plazi.org/id/).+" .

sub:taxonname a nt:GuidedChoicePlaceholder;
  rdfs:label "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)";
  nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .

rdf:type rdfs:label "is an" .

rdfs:comment rdfs:label "has the free-text comment" .

<https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation> rdfs:label
    "association of an organism taxon to an environment" .

<https://w3id.org/biolink/vocab/object> rdfs:label "links the taxon to the environment" .

<https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation (between taxon and environment)" .

<https://w3id.org/biolink/vocab/subject> rdfs:label "refers to" .

<https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage> rdfs:label "refers to the taxon's life cycle stage" .

<https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> rdfs:label "is used as defined in" .

<https://w3id.org/kpxl/biodiv/terms/hasTaxonName> rdfs:label "has the name - links a taxon usage to a taxon name" .

sub:sig npx:hasAlgorithm "RSA";
  npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB";
  npx:hasSignature "leTarJ33NCdhprZm85379+7sAlSnUD6sQlfNPgseu1v6QYokRb3hiUb6vHC0JXTQiKhGwB1i8V6v7xmfWeqX9VqPLnX8+SnUf1mpeVDTecNlzb5lhEzQkstddFyr4AsKSI0aX7D0lozxDcxiIhN+f7Co1qHBZxiHQJyEZLbubT8=";
  npx:hasSignatureTarget <http://purl.org/np/RAwy5ZloUugunk3gafYppW6MfZGQXD554XgHfCAFHH08k> .