Life sciences
type: DefinedTerm

ASReview LAB v2.2
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:46.006779+00:00
date modified: 2025-12-27 20:18:46.748331+00:00
description: AI-assisted systematic review screening tool
license: no-permission
sd date published: 2025-12-27 20:18:46.006779+00:00

Anne Fouilloux
type: Person
type: Agent
affiliation: Simula Research Laboratory
orcid: 0000-0002-1784-2920

The PRISMA 2020 statement: an updated guideline for reporting systematic reviews
type: Paper
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-29 13:49:18.378333+00:00
date modified: 2025-12-29 13:49:19.090463+00:00
description: The Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) statement, published in 2009, was designed to help systematic reviewers transparently report why the review was done, what the authors did, and what they found. Over the past decade, advances in systematic review methodology and terminology have necessitated an update to the guideline. The PRISMA 2020 statement replaces the 2009 statement and includes new reporting guidance that reflects advances in methods to identify, select, appraise, and synthesise studies. The structure and presentation of the items have been modified to facilitate implementation. In this article, we present the PRISMA 2020 27-item checklist, an expanded checklist that details reporting recommendations for each item, the PRISMA 2020 abstract checklist, and the revised flow diagrams for original and updated reviews.
license: no-permission
sd date published: 2025-12-29 13:49:18.378333+00:00

Systematic Review Dataset - Zenodo
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:19:29.530182+00:00
date modified: 2025-12-29 20:35:05.913407+00:00
description: Complete dataset including search results, ASReview project, screening decisions, and nanopub URIs. DOI: 10.5281/zenodo.18070378
license: no-permission
sd date published: 2025-12-27 20:19:29.530182+00:00

Systematic Review Pipeline - GitHub Repository
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:19:30.824807+00:00
date modified: 2025-12-27 20:23:11.216634+00:00
description: Source code repository containing all Jupyter notebooks, configuration templates, and documentation
license: no-permission
sd date published: 2025-12-27 20:19:30.824807+00:00

PICO Configuration
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:17.913600+00:00
date modified: 2025-12-28 15:54:46.796468+00:00
description: JSON configuration for quantum computing + biodiversity PICO question
encoding format: application/json
license: no-permission
sd date published: 2025-12-27 20:18:17.913600+00:00

Search Execution Configuration
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:33.107854+00:00
date modified: 2025-12-28 15:56:06.224813+00:00
description: JSON configuration with API endpoints and result counts
encoding format: application/json
license: no-permission
sd date published: 2025-12-27 20:18:33.107854+00:00

Search Strategy Configuration
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:24.605191+00:00
date modified: 2025-12-28 15:55:16.275118+00:00
description: JSON configuration with search terms, databases, and date ranges
encoding format: application/json
license: no-permission
sd date published: 2025-12-27 20:18:24.605191+00:00

Study Assessment Configuration
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:54.656235+00:00
date modified: 2025-12-30 09:17:31.394335+00:00
description: JSON with study characteristics and quality assessment
encoding format: application/json
license: no-permission
sd date published: 2025-12-27 20:18:54.656235+00:00

ASReview Export to Nanopub
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:39.646664+00:00
date modified: 2025-12-28 15:56:38.085081+00:00
description: Extracts screening decisions from ASReview project file
license: no-permission
sd date published: 2025-12-27 20:18:39.646664+00:00

PRISMA Database Search Nanopublications
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-29 19:42:12.362288+00:00
date modified: 2025-12-29 19:42:13.080219+00:00
description: Create of a nanopublication for storing the results of a bibliography search. A nanopublication is created for each database search.
license: no-permission
sd date published: 2025-12-29 19:42:12.362288+00:00

PICO Nanopub Generator
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:15.715938+00:00
date modified: 2025-12-28 15:54:20.949348+00:00
description: Generates PICO research question nanopublication from JSON config
license: no-permission
sd date published: 2025-12-27 20:18:15.715938+00:00

Search Execution - API Queries
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:28.872086+00:00
date modified: 2025-12-28 15:55:33.585290+00:00
description: Queries OpenAlex, arXiv, PubMed, Europe PMC, Semantic Scholar APIs
license: no-permission
sd date published: 2025-12-27 20:18:28.872086+00:00

Search Execution Nanopub Generator
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:30.964263+00:00
date modified: 2025-12-28 15:55:54.942706+00:00
description: Generates search execution dataset nanopublication
license: no-permission
sd date published: 2025-12-27 20:18:30.964263+00:00

Search Strategy Nanopub Generator
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:22.497310+00:00
date modified: 2025-12-28 15:55:06.338250+00:00
description: Generates search strategy nanopublication with Boolean queries
license: no-permission
sd date published: 2025-12-27 20:18:22.497310+00:00

Study Assessment Nanopub Generator
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:52.499249+00:00
date modified: 2025-12-30 09:17:07.137288+00:00
description: Generates study assessment dataset nanopublication
license: no-permission
sd date published: 2025-12-27 20:18:52.499249+00:00

Study Inclusion Nanopub Generator
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:48.208829+00:00
date modified: 2025-12-28 15:57:18.333484+00:00
description: Generates individual nanopubs for each included/excluded study
license: no-permission
sd date published: 2025-12-27 20:18:48.208829+00:00

requirements.txt
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:19:32.004249+00:00
date modified: 2025-12-27 20:23:28.849828+00:00
description: Python package dependencies: pandas, numpy, requests, rdflib, nanopub, asreview, jupyter
encoding format: text/plain
license: no-permission
sd date published: 2025-12-27 20:19:32.004249+00:00

Quantum Computing applied to Biodiversity
type: Sketch
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-29 15:46:22.541340+00:00
date modified: 2025-12-29 15:57:44.661899+00:00
description: Illustration of Quantum Computingfor Biodiversity. This illustration was generated by Perplexity.ai on 29th December 2025.
encoding format: image/png
keywords: ai-generated
license: legalcode
sd date published: 2025-12-29 15:46:22.541340+00:00

LifeWatch ERIC
type: Organization
type: Agent

Search Strategy Nanopublication
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:26.730521+00:00
date modified: 2025-12-27 20:18:27.450626+00:00
description: Published nanopub documenting the search strategy
license: no-permission
sd date published: 2025-12-27 20:18:26.730521+00:00

PICO Nanopublication
type: ResearchQuestion
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:20.280170+00:00
date modified: 2025-12-29 15:49:50.022727+00:00
description: Published nanopub defining the research question
license: legalcode
sd date published: 2025-12-27 20:18:20.280170+00:00

Search Execution Nanopublication
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:35.263368+00:00
date modified: 2025-12-29 19:14:15.467721+00:00
description: Published nanopub with search execution metadata
license: no-permission
sd date published: 2025-12-27 20:18:35.263368+00:00

Study Assessment Nanopublication
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:56.771035+00:00
date modified: 2025-12-30 09:25:09.003318+00:00
description: Published nanopub with aggregated study characteristics
license: no-permission
sd date published: 2025-12-27 20:18:56.771035+00:00

Quantum Computing Applications in Biodiversity Research - Scoping Review
type: ResearchObject
type: LiveRO
type: Dataset
type: BibliographyResearchObject
about: Life sciences
author: Anne Fouilloux
content size: 0
copyright holder: LifeWatch ERIC
creator: Anne Fouilloux
date created: 2025-12-27 20:03:25.858398+00:00
date modified: 2026-01-26 10:09:47.582777+00:00
date published: 2025-12-27 20:03:25.858398+00:00
description: A PRISMA-compliant scoping review investigating applications of quantum computing in biodiversity and ecological research. This Research Object contains the complete reproducible workflow from research question to study assessment, implemented as a pipeline of Jupyter notebooks with nanopublication outputs for transparent, machine-readable documentation. Screening: 1,649 records → 569 screened → 283 included → 238 nanopubs published.
encoding format: application/ld+json
has part: Systematic Review Dataset - Zenodo
has part: Systematic Review Pipeline - GitHub Repository
has part: requirements.txt
has part: Quantum Computing applied to Biodiversity
keywords: ASReview
keywords: PRISMA
keywords: active learning
keywords: biodiversity
keywords: nanopublications
keywords: quantum computing
keywords: reproducible research
keywords: scoping review
keywords: systematic review
license: legalcode
main entity: Research Question
publisher: LifeWatch ERIC
creation mode: MANUAL
template: https://w3id.org/ro/terms/earth-science#BibliographyCentricResearchObjectTemplate
cite-as: Fouilloux, Anne. "Quantum Computing Applications in Biodiversity Research - Scoping Review." ROHub. Dec 27 ,2025. https://w3id.org/ro-id/b6e01d7a-9f25-4b37-82df-32ef2e7171e3.

3-search-execution
type: Folder
type: Dataset
description: API queries and search result aggregation
has part: Search Execution Configuration
has part: PRISMA Database Search Nanopublications
has part: Search Execution - API Queries
has part: Search Execution Nanopub Generator
has part: Search Results CSV

biblio
type: Folder
type: Dataset
has part: The PRISMA 2020 statement: an updated guideline for reporting systematic reviews

2-search-strategy
type: Folder
type: Dataset
description: Search strategy with Boolean operators and database selection
has part: Search Strategy Configuration
has part: Search Strategy Nanopub Generator

4-screening
type: Folder
type: Dataset
description: AI-assisted screening with ASReview LAB
has part: ASReview LAB v2.2
has part: ASReview Export to Nanopub
has part: ASReview Project File
has part: Screening Decisions JSON

5b-study-assessment
type: Folder
type: Dataset
description: Study characteristics and quality assessment
has part: Study Assessment Configuration
has part: Study Assessment Nanopub Generator

5a-study-inclusion
type: Folder
type: Dataset
description: Included/excluded study nanopublications
has part: Study Inclusion Nanopub Generator
has part: Published Nanopub URIs (238 studies)

1-pico-research-question
type: Folder
type: Dataset
description: PICO framework research question definition
has part: PICO Configuration
has part: PICO Nanopub Generator

Search Results CSV
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:37.421635+00:00
date modified: 2025-12-27 20:18:38.184563+00:00
description: Aggregated search results from all databases
encoding format: text/csv
license: no-permission
sd date published: 2025-12-27 20:18:37.421635+00:00

ASReview Project File
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:41.777731+00:00
date modified: 2025-12-27 20:18:42.474928+00:00
description: ASReview LAB project with screening decisions
license: no-permission
sd date published: 2025-12-27 20:18:41.777731+00:00

Screening Decisions JSON
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:43.877924+00:00
date modified: 2025-12-27 20:18:44.598993+00:00
description: Extracted inclusion/exclusion decisions with reasons
encoding format: application/json
license: no-permission
sd date published: 2025-12-27 20:18:43.877924+00:00

Published Nanopub URIs (238 studies)
type: BibliographicResource
type: Resource
type: MediaObject
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2025-12-27 20:18:50.315296+00:00
date modified: 2025-12-29 20:38:18.771481+00:00
description: Index of all published study inclusion nanopublications
encoding format: application/json
license: no-permission
sd date published: 2025-12-27 20:18:50.315296+00:00

Quantum Computing Applications in Biodiversity Research - Scoping Review
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created: 2026-05-11T15:58:09.950+02:00
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type: Nanopublication
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has publication info: pubinfo

sig
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