. "Assigning a breeding type to a carabid species" . "${taxon} has the feature ${feature}" . . . "choose breeding type" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https%3A%2F%2Fw3id.org%2Fspaces%2Fcarabid-beetles%2Fr%2Fontology%2FBreeding_time&searchterm=" . . . . . "choose taxon" . "https://api.gbif.org/v1/species/suggest?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&q=" . "has breeding type" . "sampling" . "Biologically-Derived Material" . "an intention" . "is an instance of" . "has the location" . "has the end date" . "has the start date" . "refers to the relation" . "refers to" . "has the timepoint" . "Declares the intention to collect a sample consisting of biological material or containing biological material of some sort for a specific purpose." . . . "Declaring intention to sample biological material" . . . . . . . . . . . . . . . "naturalProducts" . . . . . . "specify the type of environmental sample (ENVO ontology)" . "https://www.ebi.ac.uk/ols/api/select?ontology=envo&q=" . . "GeoNames location ID (e.g. https://sws.geonames.org/2761367/ for Vienna, Austria)" . "https://sws\\.geonames\\.org/[0-9]+/" . . "specify the permit ID or URL" . . "specify the purpose of sampling (MESH ontology)" . "https://www.ebi.ac.uk/ols/api/select?ontology=mesh&q=" . . "sampling activity" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "sample material" . . . "time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'" . "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" . . "specify the type of tissue sample (BTO ontology)" . "https://www.ebi.ac.uk/ols/api/select?ontology=bto&q=" . "covers time period" . "has a sampling permit" . "has sampling purpose" . "has the description" . "is a version of" . "simple statement" . "has as object" . "has as predicate" . "has as subject" . "is a" . "is labeled as" . "Inverse role property (direction pin: )" . "Regular role property (direction pin: )" . "is governed by" . . "Nanopublication URI with provenance template" . . "default value of the placeholder" . . "provide a description / instructions for the template here" . . "space whose members govern this template's versions" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . "short ID of grouped statement" . . "label of thing" . . "URI/placeholder mentioned above" . . . . . . "the label pattern, e.g. '${abc} links to ${xyz}.' where 'abc' and 'xyz' refer to placeholder names" . . "datatype of the literal" . . "language tag of the literal" . "[0-9a-zA-Z-]{2,}" . . . "literal placeholder" . . . . "literal placeholder" . . . "type of nanopub created (can be class of assertion or nanopub, or main prediate in assertion)" . . . "placeholder mentioned above" . . . . . . "placeholder" . . . . . . "restr/guided choice placeholder" . . . . . . "restr/guided choice placeholder" . . . . . . "guided choice placeholder" . . . . . . "short ID of placeholder" . . . . . . "short ID of placeholder" . . . . . "type of placeholder: IRI, literal, restricted, etc." . . . . . . . . . . . . . . . . . "possible value" . . "nanopublication with possible values" . . "URL prefix for API lookup" . . "URL prefix" . . "label for URL prefix" . . "regular expression" . . "Nanopublication URI with publication info template" . . "direction of the role predicate" . . . . "role predicate to pin a direction on (select a predicate used above)" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "short ID of statement" . . . . "type of statement: simple, optional, repeatable" . . . . . . "Tag used as section heading to group templates" . . "the target namespace (URI prefix) in which the nanopublication ID is minted" . . . . . "This nanopublication defines an assertion template. Such templates are used to generate the input form for the assertion part of nanopublications. A role predicate used above (fixed IRI or placeholder) can be pinned as gen:InverseRoleProperty / gen:RegularRoleProperty in the publication info to declare its direction." . "Defining an assertion template (new version)" . "short local name of this template" . . "${tlabel}" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Templates" . . . . "cross-version ID for this template" . . "template can be marked as unlisted here" . . . . "short ID of grouped statement" . . . "name of this template" . . "URI/literal/placeholder of the object" . . "integer value for statement order" . . "URI/placeholder of the predicate" . . . "short ID of simple statement" . . . . "short ID of statement" . . . . . "short ID of simple statement" . . . "URI/placeholder of the subject" . "advanced statement" . "Agent placeholder" . "assertion template" . "Auto-escape URI placeholder" . "Embedded resource" . "External URI placeholder" . "grouped statement" . "Guided choice placeholder" . "Introduced resource" . "Literal placeholder" . "Local resource" . "Long literal placeholder" . "optional statement" . "repeatable statement" . "Restricted choice placeholder" . "Root nanopublication placeholder" . "Sequence element placeholder" . "Trusty URI placeholder" . "Unlisted template" . "URI placeholder" . "URI/literal placeholder" . "has the datatype" . "has default provenance" . "has the default value" . "has the language tag" . "has the nanopub label pattern - assigns a pattern used to generate a human-readable label for the whole nanopublication" . "has prefix" . "has prefix label" . "has regular expression" . "has required publication info" . "includes" . "has tag" . "has the target namespace" . "has the target nanopub type" . "has as possible value" . "has possible values from" . "has possible values from API" . "has statement order value" . . "A finding presented as evidence: a statement typed as the SIO evidence class that bears on a claim through a typed (CiTO) relation. It is an ordinary discourse contribution (a schema:Statement carrying rdf:value and a CiTO stance) additionally typed as evidence, so it flows through the same discourse queries as any other contribution." . "Evidence finding" . . . . . "Discourse" . . . . . . . . . . . . . . . . . . . "A question posed to the discourse graph: a schema:Question carrying its text in rdf:value. It may reply to a prior contribution (as:inReplyTo), or carry a rhetorical CiTO stance toward one when the question implicitly challenges its target (e.g. cito:disputes), and may cite evidence. Answers are separate contributions that target this question. A standalone question with no target is valid." . "Question" . . . . . . "Discourse" . . . . . . . . . . . . . . . . . . . . . . . . . . . "comment text (v2)" . . . . . "Version 2 of the governed test template (docs/template-identity-and-governance.md in the nanodash repo). Deliberately carries NO npx:supersedes link to its predecessor: it becomes the canonical version purely via space-based governed resolution (newest version of the (kind, space) pair signed by a current member+ of the governing space). Not meant for real content." . . "🧪 Test template with embedded identity (v2)" . . . . "URI of the thing to comment on (v2)" . . "label text" . . . . . "A test template whose template node is an embedded IRI (not the assertion graph URI) and whose versions are governed by the Knowledge Pixels space, per docs/template-identity-and-governance.md in the nanodash repo. Used to verify embedded-identity parsing, server-side type inference, and space-based governed version resolution end-to-end. Not meant for real content." . . "🧪 Test template with embedded identity (v1)" . . . . "URI of the thing to label" . "cites as evidence" . "type" . "value" . "Statement" . . "A discourse statement that takes a typed (CiTO) stance toward, and/or replies to, another contribution, and may cite evidence. A statement with no stance, reply, or evidence is a valid standalone claim (e.g. a thread root)." . "Discourse contribution" . . . . . . "Discourse" . . . . . . . . . . . . . . . . . . . . . . . . . . . "statement text" . . "In Reply To" . "is an" . "has the free-text comment" . "links the taxon to the chorotype" . "has the relation" . "refers to" . "refers to the taxon's life cycle stage" . "is used as defined in" . "has the name - links a taxon usage to a taxon name" . . "Such a nanopublication expresses an association between an organism taxon (e.g. a species) and a chorotype, for example expressing that the organisms of the given species have a distribution range matching the specified chorotype." . "Expressing an association between an organism taxon and a chorotype" . . "${taxonname} - has distribution range - ${chorotype}" . . . . . . . . . "Biodiversity" . . . . "this association" . . "the chorotype to be associated with the taxon" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https%3A%2F%2Fw3id.org%2Fspaces%2Fcarabid-beetles%2Fr%2Fontology%2FChorotype&searchterm=" . . "short explanation related to the above statement" . . "the life cycle stage" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "a taxon concept" . . "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" . "(https://doi.org/|https://treatment.plazi.org/id/).+" . . "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" . "https://api.gbif.org/v1/species/suggest?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&q=" . "association of an organism taxon to a chorotype" . "has distribution range" . "AIDA sentence - an English sentence that is Atomic, Independent, Declarative, and Absolute" . "is about - connects a thing (left) to a subject matter that this thing is about (right)" . "is an - connects a thing (left) to a class it belongs to (right)" . "is derived from - connects the statement (left) to a source it is derived from (right)" . "covers - connects a resource (left) to a claim it covers (right)" . . . "Type your AIDA sentence here (needs to end with a full stop)" . "http://purl.org/aida/" . "the claim" . "[\\S ]{5,500}\\." . . "Such nanopublications state that a resource covers a claim, where the claim is expressed as an AIDA sentence (Atomic, Independent, Declarative, Absolute) and linked to the source(s) it is derived from. Opened from a resource page, the resource is pre-filled, so the new claim is connected to that resource via gen:coversClaim and shows up among its covered claims." . "Covering a claim as a literature-derived AIDA sentence" . "${aida}" . . . . . "Claims" . . . "the resource that covers this claim" . . "DOI (https://doi.org/10...) or URL of the source the sentence is derived from" . . . . . . . . . . . . . . . . . "identifier of concept or topic the sentence is about" . "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . "has the description" . "has the end date" . "has the start date" . "is a" . "has the label" . "Ashley Caselli" . "Tobias Kuhn" . "Virginia Balseiro" . "activated preset assignment" . "Event" . "preset assignment" . "Space" . "has as admin" . "has as root definition" . "is an assignment for" . "is an assignment of the preset" . . "

Add a new office hour as a sub-space of the Incubator Office Hours space.

\r\n\r\n

The super-space, the type (an Event), and the admins are fixed. Enter the date of the office hour as an eight-digit suffix (YYYYMMDD); it is appended to the fixed space prefix to form the sub-space identifier. The created sub-space is also assigned the General regular meeting preset.

" . "Adding an Incubator office hour" . "${label}" . . . . . . . . . . . . . . . "Spaces" . . . . . . "this assignment" . . "the description of the office hour" . "This is one of the weekly office hours of the Knowledge Pixels incubators." . . "end date (and optionally time)" . . . "the name of the office hour" . "Office Hour DD Month YYYY" . . . . "date of the office hour as an eight-digit suffix (YYYYMMDD)" . "https://w3id.org/spaces/knowledgepixels/incubator/officehours/" . "Office hour" . "[0-9]{8}" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "start date (and optionally time)" . . . . . . . . . . . . . . . . . . "General regular meeting preset" . "has role" . "is part of" . "has alternative name" . "has comment" . "identifier type" . "is a" . "has the label" . "is a subclass of" . "class" . "is exactly the same as (external identifier)" . . "the alias (short name) used in the given context" . . "the alias type, e.g. \"short_name\"" . . "an alternative name" . . "an alternative name (Dutch, nl-be)" . "nl-be" . . "

Such a nanopublication defines a biochementity: a chemical entity (compound, metabolite, isomer, group, …) as a subclass of BioChemEntity, with its names (including Dutch/nl-be variants), external identifiers, chemical roles, inter-entity relations and context-specific aliases.

" . "Defining a biochementity" . . . . . . . . . . . . . . . . . . . . "Terms" . . "a comment" . . "context: organization (ROR id)" . "https://api.ror.org/organizations?query=" . . "a context-specific alias" . . "external identifier (identifiers.org: InChIKey, CHEBI, CAS, PubChem, …)" . . "the group label" . . "the biochementity this one is an isomer of" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Fpeh%2Fterms%2FBioChemEntity&searchterm=" . . "the biochementity this one is a metabolite of" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Fpeh%2Fterms%2FBioChemEntity&searchterm=" . . "the name of the biochementity" . . "the name of the biochementity (Dutch, nl-be)" . "nl-be" . . "the parent class (BioChemEntity, or another biochementity)" . . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Fpeh%2Fterms%2FBioChemEntity&searchterm=" . . "a chemical role (e.g. an obo/CHEBI role such as flame retardant)" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "the vocabulary / ontology this biochementity is part of" . . "http://purl.org/nanopub/api/find_signed_things?type=http://www.w3.org/2002/07/owl%23Ontology&searchterm=" . . "this biochementity" . "BioChemEntity (top class)" . "context alias" . "has context (organization)" . "has context alias" . "has group label" . "is an isomer of" . "is a metabolite of" . "is a part of" . "is a version of" . "is an" . "has the label" . "OWL ontology" . "ontology version" . "has the content index" . . "Defining a version of an OWL ontology" . . . . . . . "Ontologies" . . "choose content index" . . "label of the ontology" . . "URI of the ontology across its versions" . . . "ontology version URI" . . . . . . . . . . . . . . . . . . . "has the description" . "has the end date" . "has the location" . "has the start date" . "is a" . "has the label" . "has the alternative ID" . "Campaign - (with focus on outreach)" . "Event - (with focus on exchange)" . "Initiative - (with focus on coordination)" . "Project - (with focus on getting work done)" . "Space" . "has as admin" . "has as root definition" . . "an admin of the Space" . . "alternative URI" . . "Such nanopublications defines a time-limited Space, i.e. a project, initiative, campaign, or event." . "Defining a time-limited Space" . . . . . . . . . . . "Spaces" . . "the description of the Space" . . "end date (and optionally time)" . . . "the name of the Space" . . "the location as a URI (e.g. a web page or map link)" . . . . "Space identifier" . "https://w3id.org/spaces/" . "https://w3id.org/spaces/" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "start date (and optionally time)" . . . "type of the Space" . . . . . . "Assigning a feature to an organism taxon" . "${taxon} has the feature ${feature}" . . . "choose biological feature" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . . . . . "choose taxon" . "https://api.gbif.org/v1/species/suggest?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&q=" . "has the feature" . "is an" . "has the free-text comment" . "association between two organism taxa" . "refers to - links an association to its object" . "refers to the relation (between subject taxon and object taxon)" . "refers to - links an association to its subject" . "refers to the object taxon's life cycle stage" . "refers to the subject taxon's life cycle stage" . "is used as defined in" . "has the name - links a taxon usage to a taxon name" . . "

Such a nanopublication expresses an association between classes of organisms (taxa), a subject taxon and an object taxon, for example expressing that the organisms of the subject taxon prey on organisms of the object taxon.

\r\n\r\n

For expressing observations of interactions between individual organisms, please use the alternative template \"Associations between organisms\".

" . "Expressing an association between two organism taxa" . . "${subjtaxonname} - ${relation} - ${objtaxonname}" . . . . . . . . . . . . "Biodiversity" . . . . "this association" . . "short explanation related to the above statement" . . "the life cycle stage of the object taxon" . . . "the object taxon concept" . . "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" . "(https://doi.org/|https://treatment.plazi.org/id/).+" . . "search and select from list (via GBIF)" . "https://api.gbif.org/v1/species/suggest?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&q=" . . "the type of relation between the two taxa" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "the life cycle stage of the subject taxon" . . . "the subject taxon concept" . . "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" . "(https://doi.org/|https://treatment.plazi.org/id/).+" . . "search and select from list (via GBIF)" . "https://api.gbif.org/v1/species/suggest?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&q=" . "has habitat" . "is an" . "has the free-text comment" . "association of an organism taxon to an environment" . "links the taxon to the environment" . "refers to the relation (between taxon and environment)" . "refers to" . "refers to the taxon's life cycle stage" . "is used as defined in" . "has the name - links a taxon usage to a taxon name" . . "Such a nanopublication expresses an association between an organism taxon (listed in GBIF Backbone Taxonomy) and an environment (EUNIS classification), for example expressing that the organisms of the given species inhabit the specified environment, represented by EUNIS identifier." . "(new) expressing an association between an organism taxon (GBIF checklist) and an environment (according to EUNIS)" . . "${taxonname} - ${relation} - ${environment}" . . . . . . . . . "Biodiversity" . . . . "this association" . . "short explanation related to the above statement" . . "the environment (via EUNIS identifier)" . "https://discodata.eea.europa.eu/sql?query=SELECT%20concat(%27https%3A%2F%2Feunis.eea.europa.eu%2Fhabitats%2F%27%2C%5Bid_habitat%5D)%20as%20%5B%40id%5D%2C%20%5Bscientific_name%5D%20AS%20label%2C%20%5Bhabitat_description%5D%20as%20description%20FROM%20%5BEUNIS%5D.%5Blatest%5D.%5BHabitat_Information%5D%20WHERE%20%5Bhabitat_category%5D%20LIKE%20%27%25EUNIS%25%27%20AND%20concat(%5Bscientific_name%5D%2C%27%20%27%2C%5Benglish_name%5D%2C%27%20%27%2C%5Beunis_habitat_code%5D)%20LIKE%20%27%25 %25%27&p=1&nrOfHits=80&mail=null&schema=null" . . "the life cycle stage" . . . "the type of relation between the taxon and the environment" . . "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "a taxon concept" . . "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" . "(https://doi.org/|https://treatment.plazi.org/id/).+" . . "search and select from list (via GBIF Backbone Taxonomy)" . "https://api.gbif.org/v1/species/suggest?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&q=" . "has habitat" . "is an" . "has the free-text comment" . "association of an organism taxon to an environment" . "links the taxon to the environment" . "refers to the relation (between taxon and environment)" . "refers to" . "refers to the taxon's life cycle stage" . "is used as defined in" . "has the name - links a taxon usage to a taxon name" . . "Such a nanopublication expresses an association between an organism taxon (listed in GBIF Backbone Taxonomy) and an environment (EUNIS classification), for example expressing that the organisms of the given species inhabit the specified environment, represented by EUNIS identifier." . "(new) for expressing an association between an organism taxon (GBIF checklist) and an environment (according to EUNIS)" . . "${taxonname} - ${relation} - ${environment}" . . . . . . . . . "Biodiversity" . . . . "this association" . . "short explanation related to the above statement" . . "the environment (via EUNIS identifier)" . "https://discodata.eea.europa.eu/sql?query=SELECT%20concat(%27https%3A%2F%2Feunis.eea.europa.eu%2Fhabitats%2F%27%2C%5Bid_habitat%5D)%20as%20%5B%40id%5D%2C%20%5Bscientific_name%5D%20AS%20label%2C%20%5Bhabitat_description%5D%20as%20description%20FROM%20%5BEUNIS%5D.%5Blatest%5D.%5BHabitat_Information%5D%20WHERE%20%5Bhabitat_category%5D%20LIKE%20%27%25EUNISrev%25%27%20AND%20concat(%5Bscientific_name%5D%2C%27%20%27%2C%5Benglish_name%5D%2C%27%20%27%2C%5Beunis_habitat_code%5D)%20LIKE%20%27%25 %25%27&p=1&nrOfHits=50&mail=null&schema=null" . . "the life cycle stage" . . . "the type of relation between the taxon and the environment" . . "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "a taxon concept" . . "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" . "(https://doi.org/|https://treatment.plazi.org/id/).+" . . "search and select from list (via GBIF Backbone Taxonomy)" . "https://api.gbif.org/v1/species/suggest?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&q=" . "has article" . "has dataset" . "has DMP" . "has method" . "has pre-registration" . "has presentation" . "has software" . . "Declares that a given project produced or reused a specific FAIR output, using the FAIR-findings (ff) vocabulary. Pick the kind of output (article, dataset, software, method, data management plan, or pre-registration), then give its DOI/URL and, optionally, a title." . "Linking a FAIR output to a project" . "${project} ${relation} ${output}" . . . "FAIR Findings" . "Spaces" . . . "the output (paste a DOI, URL, or other identifier)" . . "title of the output (optional)" . . "choose the project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Project" . . "kind of output" . . . . . . . . . . . . . . . "is a version of" . "has the title" . "is a" . "has the label" . "admins" . "2/12 columns" . "3/12 columns" . "4/12 columns" . "5/12 columns" . "6/12 columns" . "7/12 columns" . "8/12 columns" . "9/12 columns" . "10/12 columns" . "12/12 columns" . "everyone" . "list view" . "maintainers" . "members" . "observers" . "resource view" . "tabular view" . "view entry action - an action that is applied on a result entry of the view" . "view result action - an action that is applied on the entire result of a view" . "applies to instances of" . "applies to the namespace" . "is governed by" . "has the template" . "has the template part field" . "has the query mapping" . "has the template target field" . "has the display width" . "has the page size" . "has the structural position" . "has the action" . "has the query" . "has the query target field" . "is visible to" . . . "short ID suffix for the action" . . . "text shown on the action button" . . "choose the template for this action" . "https://w3id.org/np/l/nanopub-query-1.1/api/RARD6qOGIXUvfxmf5CQNEDxPqlTVCqeLdWeSg5h8tUcEA/search-templates" . . "the template field URI suffix" . "resource" . . "put \"void\" if not applicable" . "void" . . "table column to template param mapping like 'col:param'" . "void" . . "the type of the action" . . . . . "restrict this action to a role tier (or a specific role IRI)" . . . . . . . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/SpaceMemberRole" . . "classes this view applies to" . . "namespace this view applies to" . . "Declaring a view that is to be shown on a resource page (i.e. user/space/maintained resource page), optionally governed by a space: declaring 'is governed by' makes the newest version of this view's kind published by a current member of that space the canonical one (authority-scoped latest-wins; the kind needs to be a maintained resource of the space)." . "Declaring a resource view (with governed-by)" . . . . . . . . . . . . . . . "Spaces" . . "space whose members govern this view's versions (authority-scoped latest-wins)" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . "label of the view" . . "number of elements/rows per page" . "[0-9]+" . . "choose the query" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/grlc/grlc-query" . . "the query placeholder name" . "resource" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "digits for section/subsection + short id like '5.5.thing'" . "[1-9]\\.[1-9]\\..*" . . "title to be shown as table header" . . . . "short ID suffix for the view" . . . "short suffix or existing URI of view kind" . . "choose the type of view" . . . . . "choose display width" . . . . . . . . . . . "has the description" . "simple statement" . "has as object" . "has as predicate" . "has as subject" . "is a" . "is labeled as" . "Inverse role property (direction pin: )" . "Regular role property (direction pin: )" . . "This nanopublication defines an assertion template. Such templates are used to generate the input form for the assertion part of nanopublications." . "Defining an assertion template" . "${tlabel}" . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Templates" . . "Nanopublication URI with provenance template" . . "default value of the placeholder" . . "provide a description / instructions for the template here" . . . "short ID of grouped statement" . . "label of thing" . . "URI/placeholder mentioned above" . . . . . . "the label pattern, e.g. '${abc} links to ${xyz}.' where 'abc' and 'xyz' refer to placeholder names" . . "datatype of the literal" . . "language tag of the literal" . "[0-9a-zA-Z-]{2,}" . . . "literal placeholder" . . . . "literal placeholder" . . . "type of nanopub created (can be class of assertion or nanopub, or main prediate in assertion)" . . . "placeholder mentioned above" . . . . . . "placeholder" . . . . . . "restr/guided choice placeholder" . . . . . . "restr/guided choice placeholder" . . . . . . "guided choice placeholder" . . . . . . "short ID of placeholder" . . . . . . "short ID of placeholder" . . . . . "type of placeholder: IRI, literal, restricted, etc." . . . . . . . . . . . . . . . . . "possible value" . . "nanopublication with possible values" . . "URL prefix for API lookup" . . "URL prefix" . . "label for URL prefix" . . "regular expression" . . "Nanopublication URI with publication info template" . . "direction of the role predicate" . . . . "role predicate to pin a direction on (select a predicate used above)" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "short ID of statement" . . . . "type of statement: simple, optional, repeatable" . . . . . . "Tag used as section heading to group templates" . . "the target namespace (URI prefix) in which the nanopublication ID is minted" . . "template can be marked as unlisted here" . . . . "short ID of grouped statement" . . . "name of this template" . . "URI/literal/placeholder of the object" . . "integer value for statement order" . . "URI/placeholder of the predicate" . . . "short ID of simple statement" . . . "short ID of statement" . . . . . "short ID of statement" . . . . . "short ID of simple statement" . . . "URI/placeholder of the subject" . "advanced statement" . "Agent placeholder" . "assertion template" . "Auto-escape URI placeholder" . "Embedded resource" . "External URI placeholder" . "grouped statement" . "Guided choice placeholder" . "Introduced resource" . "Literal placeholder" . "Local resource" . "Long literal placeholder" . "optional statement" . "repeatable statement" . "Restricted choice placeholder" . "Root nanopublication placeholder" . "Sequence element placeholder" . "Trusty URI placeholder" . "Unlisted template" . "URI placeholder" . "URI/literal placeholder" . "has the datatype" . "has default provenance" . "has the default value" . "has the language tag" . "has the nanopub label pattern - assigns a pattern used to generate a human-readable label for the whole nanopublication" . "has prefix" . "has prefix label" . "has regular expression" . "has required publication info" . "includes" . "has tag" . "has the target namespace" . "has the target nanopub type" . "has as possible value" . "has possible values from" . "has possible values from API" . "has statement order value" . . "has as helper" . . "Such a nanopublication declares that an agent (human or artificial) is a helper of the given space." . "Declaring a helper of a space" . "${space} has helper ${helper}" . . "Spaces" . . . "choose the helper" . . "choose the space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . "has output" . . "Such a nanopublication declares that a given project has an existing publication as one of its outputs." . "Linking a publication to a project" . "${project} has output ${publication}" . . "Spaces" . . "choose the project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Project" . . "choose the publication" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=http://purl.org/spar/fabio/ScholarlyWork" . . . . "has the abstract" . "has the publication date" . "includes - links a thing to a part it includes" . "is part of" . "has the title" . "has" . "is in journal issue" . "has end page" . "has start page" . "is in journal volume" . "article - A written work published in a periodical such as a journal." . "book chapter - A defined chapter of a book, usually with a separate title or number." . "conference paper - A scholarly work presented at a conference and usually published in the conference proceedings." . "in-use paper - A scholarly work that describes applied and validated solutions such as software tools, systems or architectures that benefit from the use of the technology of a particular scholarly domain." . "journal editorial - An editorial published in an issue of a journal." . "methods paper - A scholarly work detailing a method, procedure or experimental protocol employed in a particular scholarly domain." . "position paper - A scholarly work that reports a particular intellectual position or viewpoint regarding a particular scholarly topic." . "research paper - A scholarly work that reports original research contributions addressing theoretical, analytical or experimental aspects of a particular scholarly domain." . "resource paper - A scholarly work that describes resources developed to provide experimental materials or facilities, support a research hypothesis, to provide answers to a research question, or that have contributed to the generation of novel scientific work." . "review paper - A scholarly work that surveys the state of the art of topics central to a particular subject or relating to a specific domain (e.g. the scope of a certain journal or conference)." . "scholarly work - A general term that includes all other listed types" . "has the affiliation" . "has the email address" . "is a" . "has the name" . . "the abstract of the article" . . "Select organization from above" . . . "Select author from above" . . . . "DOI of the article (starting with https://doi.org/10...)" . "https://doi\\.org/10.+" . . "The type of the article" . . . . . . . . . . . . . . "Such a nanopublication contains the main high-level metadata about a scholarly article, including title, authors, and links to other nanopublications." . "Describing core article metadata" . "Article: ${title}" . . . . . . . . . . . . . . . . . "Journals" . . . "ORCID (https://orcid.org/...) of the author, or another URI if the author has no ORCID" . "https?://.+" . . "email address of author" . "[A-Za-z0-9._+\\-\\']+@[A-Za-z0-9.\\-]+\\.[A-Za-z]{2,}" . . "this author list" . . "full name of author" . . "Select author to specify an email address for" . . . "date, e.g. \"2023-07-21\", \"2023-07\", or \"2023\"" . "(1[0-9][0-9][0-9]|20[0-2][0-9])(-(1[0-2]|0[1-9])(-(3[0-1]|[1-2][0-9]|0[1-9]))?)?" . . "issue number" . . "ISSN of the journal (e.g. \"2451-8492\")" . "http://id.crossref.org/issn/" . "the journal with ISSN" . . "Title of the journal" . . "has at position ${number}" . "http://www.w3.org/1999/02/22-rdf-syntax-ns#_" . "includes as element number" . "[1-9][0-9]*" . . "ROR identifier (https://ror.org/...) or short local URI suffix (e.g. \"stanford\")" . "(https://ror\\.org/[0-9a-z]+|[a-zA-Z0-9_\\-]+)" . . "The name of the organization" . . "end page number" . . "start page number" . . "a part belonging to this article, e.g. a nanopublication" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "The title of the article" . . "volume number" . "has the description" . "is a" . "has the label" . "has the alternative ID" . "Alliance - (with focus on bringing units together)" . "Community - (with focus on exchange)" . "Division - (with focus on structuring into sub-units)" . "Group - (with focus on getting work done)" . "Organization - (with focus on formal vessel)" . "Outlet - (with focus on outreach)" . "Program - (with focus on coordination)" . "Space" . "has as admin" . "has the root definition" . "is a sub-space of" . . "an admin of the Space" . . "alternative ID" . . "Such nanopublications defines an open-ended Space, i.e. an organization, group, program, or community." . "Defining an open-ended Space with existing URI" . . . . . . . . . "Spaces" . . "the description of the Space" . . "the name of the Space" . . "the parent Space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . "Space identifier" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "type of the Space" . . . . . . . . "has the text" . "has the link / further info at" . "is about" . . "Publish a plain-text message for a resource" . "${message}" . . . . "Spaces" . . . "link your message is about or with additional info" . . "your plain-text message" . . "choose the resource (e.g. Space)" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/MaintainedResource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . "has the description" . "is a" . "has the label" . "has the alternative ID" . "Alliance - (with focus on bringing units together)" . "Community - (with focus on exchange)" . "Division - (with focus on structuring into sub-units)" . "Group - (with focus on getting work done)" . "Organization - (with focus on formal vessel)" . "Outlet - (with focus on outreach)" . "Program - (with focus on coordination)" . "Space" . "has as admin" . "has as root definition" . "is a sub-space of" . . "an admin of the Space" . . "alternative URI" . . "Such nanopublications defines an open-ended Space, i.e. a group, program, outlet, or community." . "Defining an open-ended Space" . . . . . . . . . "Spaces" . . "the description of the Space" . . "the name of the Space" . . "the parent Space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . "Space identifier" . "https://w3id.org/spaces/" . "https://w3id.org/spaces/" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "type of the Space" . . . . . . . . "has maintainer" . . "an admin of the Space" . . "Declaring a maintainer of a Space" . "${space} has maintainer ${admin}" . . "Spaces" . . . "choose a Space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space&searchterm=" . . . . "has the title" . "has the name" . "is a" . "has the label" . "Maintainer-tier role" . "Member-tier role" . "Observer-tier role" . "space member role" . "has the inverse property" . "has the regular property" . "has the role assignment template" . . "Declaring a space member role" . . . . . . . . . "Spaces" . . . "inverse property URI (space-to-agent)" . . "the label for the role" . . "short name, e.g. \"member\"" . . "regular property URI (agent-to-space)" . . . . "short ID suffix" . . "choose template" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAvSIHegG4Mb-Q64cWQoghLffvN_2NdDdqxNnOhJSZQfs/search-templates" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "tier" . . . . . . "short header title, e.g. \"Members\"" . "is a" . "activated preset assignment" . "deactivated preset assignment" . "preset assignment" . "is an assignment for" . "is an assignment of the preset" . . "

Assign a preset (a named bundle of default views and roles) to a maintained resource, so that the resource picks up the preset's views and roles.

\n\n

Only presets designed for maintained resources (gen:appliesToInstancesOf gen:MaintainedResource) are offered. Like view displays, a preset assignment is identified by the (preset, resource) pair rather than by this nanopublication's URI, so it can later be deactivated by an equal-or-higher-tier member.

" . "Assigning a preset to a maintained resource" . "${resource} uses preset: ${preset}" . . . . . "Spaces" . . . "this" . . "select whether this assignment is activated or deactivated" . . . . . "choose the preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RASzbAAibVFh25rujZN2MwgyUB7zHogsxo7-UgI05Dotg/find-presets?appliedPresetClass=https://w3id.org/kpxl/gen/terms/MaintainedResource" . . "the ID of the resource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/MaintainedResource" . . . . . . . . . . . . . . "is a" . "activated preset assignment" . "deactivated preset assignment" . "preset assignment" . "is an assignment for" . "is an assignment of the preset" . . "

Assign a preset (a named bundle of default views and roles) to a space, so that the space picks up the preset's views and roles.

\n\n

Only presets designed for spaces (gen:appliesToInstancesOf gen:Space) are offered. Like view displays, a preset assignment is identified by the (preset, resource) pair rather than by this nanopublication's URI, so it can later be deactivated by an equal-or-higher-tier member.

" . "Assigning a preset to a space" . "${resource} uses preset: ${preset}" . . . . . "Spaces" . . . "this" . . "select whether this assignment is activated or deactivated" . . . . . "choose the preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RASzbAAibVFh25rujZN2MwgyUB7zHogsxo7-UgI05Dotg/find-presets?appliedPresetClass=https://w3id.org/kpxl/gen/terms/Space" . . "choose the space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . "is a" . "activated preset assignment" . "deactivated preset assignment" . "preset assignment" . "is an assignment for" . "is an assignment of the preset" . . "

Assign a preset (a named bundle of default views and roles) to a user, so that the user's page picks up the preset's views and roles.

\n\n

Only presets designed for users (gen:appliesToInstancesOf gen:IndividualAgent) are offered. Like view displays, a preset assignment is identified by the (preset, resource) pair rather than by this nanopublication's URI, so it can later be deactivated.

" . "Assigning a preset to a user" . "${resource} uses preset: ${preset}" . . . . . "Spaces" . . . "this" . . "select whether this assignment is activated or deactivated" . . . . . "choose the preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RASzbAAibVFh25rujZN2MwgyUB7zHogsxo7-UgI05Dotg/find-presets?appliedPresetClass=https://w3id.org/kpxl/gen/terms/IndividualAgent" . . "choose the user" . . . . . . . . . . . . . . "is a" . "deactivated preset assignment" . "preset assignment" . "is an assignment for" . "is an assignment of the preset" . . "

Deactivate a preset assignment on a resource. A preset assignment is identified by the (preset, resource) pair rather than by a nanopublication URI, so this publishes a new assignment nanopublication re-describing the pair as deactivated (latest wins); the earlier activation does not need to be superseded and may have been published by someone else.

" . "Deactivating a preset assignment" . "${resource} deactivates preset: ${preset}" . . . . . "Spaces" . . . "this" . . "choose the preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAs7Q2IMbb7C2WzFa98bVwlDMhN3kJ0rrF9cSEybtvLaA/find-embedded-things?type=https://w3id.org/kpxl/gen/terms/Preset" . . "the ID of the resource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/MaintainedResource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . "is part of" . "FAQ entry" . "is a" . "has the question" . "unanswered question" . "has the answer" . "has the position string" . . "the answer" . . "Create an FAQ entry" . "FAQ: ${question}" . . . . . . . . "entity this FAQ entry is part of" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/MaintainedResource" . . . "this FAQ entry" . . "string determining the order of the FAQ entries" . . "the question" . . . . . . . . . . . . . . . . . . . . . . "mark as still unanswered (leave empty once answered)" . . "is a version of" . "has the title" . "is a" . "has the label" . "admins" . "2/12 columns" . "3/12 columns" . "4/12 columns" . "5/12 columns" . "6/12 columns" . "7/12 columns" . "8/12 columns" . "9/12 columns" . "10/12 columns" . "12/12 columns" . "everyone" . "list view" . "maintainers" . "members" . "observers" . "resource view" . "tabular view" . "view entry action - an action that is applied on a result entry of the view" . "view result action - an action that is applied on the entire result of a view" . "applies to instances of" . "applies to the namespace" . "has the template" . "has the template part field" . "has the query mapping" . "has the template target field" . "has the display width" . "has the page size" . "has the structural position" . "has the action" . "has the query" . "has the query target field" . "is visible to" . . . "short ID suffix for the action" . . . "text shown on the action button" . . "choose the template for this action" . "https://w3id.org/np/l/nanopub-query-1.1/api/RARD6qOGIXUvfxmf5CQNEDxPqlTVCqeLdWeSg5h8tUcEA/search-templates" . . "the template field URI suffix" . "resource" . . "put \"void\" if not applicable" . "void" . . "table column to template param mapping like 'col:param'" . "void" . . "the type of the action" . . . . . "restrict this action to a role tier (or a specific role IRI)" . . . . . . . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/SpaceMemberRole" . . "classes this view applies to" . . "namespace this view applies to" . . "Declaring a view that to be shown on a resource page (i.e. user/space/maintained resource page)." . "Declaring a resource view" . . . . . . . . . . . . . . "Spaces" . . "label of the view" . . "number of elements/rows per page" . "[0-9]+" . . "choose the query" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/grlc/grlc-query" . . "the query placeholder name" . "resource" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "digits for section/subsection + short id like '5.5.thing'" . "[1-9]\\.[1-9]\\..*" . . "title to be shown as table header" . . . . "short ID suffix for the view" . . . "short suffix or existing URI of view kind" . . "choose the type of view" . . . . . "choose display width" . . . . . . . . . . . "has the topic" . "has the description" . "has the title" . "is a use case for" . . "Declare an existing resource (identified by its URI — e.g. a Space, project, dataset, or any URI) as a use case for a given Space or Maintained Resource, with an optional title, description, and general topic." . "Describing a use case for a resource" . "${useCase} is a use case for ${entity}" . . . . . . . "description of the use case" . . "the Space or Maintained Resource this is a use case for" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/MaintainedResource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . . . . "general topic/category (optional)" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . . "title/label for the use case (optional)" . . "the use case (an existing URI, e.g. a Space, project, or dataset)" . "has the description" . "is a version of" . "is a" . "has the name" . "individual agent" . "maintained resource" . "preset - a named bundle of default views and roles that applies to a resource type" . "space" . "applies to instances of" . "applies to the namespace" . "has the role" . "has the top-level view" . "has the view" . . "the type of resource page this preset applies to" . . . . . "optionally, a namespace (URI prefix) this preset applies to" . . "

Publish a preset: a named bundle that defines which views are shown by default and which roles are set up for a resource page — applied to all instances of a resource type (user, space, or maintained resource), so that any such resource automatically picks up the preset.

\n\n

Presets appear in view dropdowns alongside individual views, marked as a preset. A preset can bundle:

\n
    \n
  • one or more views to display by default, and
    • \n
  • one or more role definitions to set up (e.g. to be assigned to the space).
    • \n
\n\n

Like resource views, a preset has a stable preset kind (linked via dct:isVersionOf) that persists across superseding versions.

\n\n

This template introduces the proposed term gen:Preset (reusing the existing gen:hasView and gen:hasRole properties) and is a draft for nanodash issue #302.

" . "Publishing a preset" . . . . . . . . . . "Spaces" . . . "an optional description of what this preset is for" . . "a short name for this preset (e.g. \"Nano Session\")" . . . . "short ID suffix for the preset" . . . "short suffix or existing URI of the preset kind" . . "a role definition to include in this preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/SpaceMemberRole" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "a view to show at the top level for this preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAs7Q2IMbb7C2WzFa98bVwlDMhN3kJ0rrF9cSEybtvLaA/find-embedded-things?type=https://w3id.org/kpxl/gen/terms/ResourceView" . . "a view to show by default for this preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAs7Q2IMbb7C2WzFa98bVwlDMhN3kJ0rrF9cSEybtvLaA/find-embedded-things?type=https://w3id.org/kpxl/gen/terms/ResourceView" . "is a" . "activated preset assignment" . "deactivated preset assignment" . "preset assignment" . "is an assignment for" . "is an assignment of the preset" . . "

Assign a preset (a named bundle of default views and roles) to a resource — a space or a maintained resource — so that the resource picks up the preset's views and roles.

\n\n

Like view displays, a preset assignment is identified by the (preset, resource) pair rather than by this nanopublication's URI. This means another user can later publish a deactivation of the same assignment (with their own key, without superseding this one); the application aggregates all assignments for the pair and resolves the activation state.

\n\n

This template uses the proposed terms gen:PresetAssignment, gen:ActivatedPresetAssignment, gen:DeactivatedPresetAssignment, gen:isAssignmentOfPreset and gen:isAssignmentFor, mirroring the existing view-display vocabulary, and is a draft for nanodash issue #302.

" . "Assigning a preset to a resource" . "${resource} uses preset: ${preset}" . . . . . "Spaces" . . . "this" . . "select whether this assignment is activated or deactivated" . . . . . "choose the preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAs7Q2IMbb7C2WzFa98bVwlDMhN3kJ0rrF9cSEybtvLaA/find-embedded-things?type=https://w3id.org/kpxl/gen/terms/Preset" . . "the ID of the resource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/MaintainedResource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . "has the description" . "is a version of" . "is a" . "has the name" . "individual agent" . "maintained resource" . "preset - a named bundle of default views and roles that applies to a resource type" . "space" . "applies to instances of" . "applies to the namespace" . "has the role" . "has the view" . . "the type of resource page this preset applies to" . . . . . "optionally, a namespace (URI prefix) this preset applies to" . . "

Publish a preset: a named bundle that defines which views are shown by default and which roles are set up for a resource page — applied to all instances of a resource type (user, space, or maintained resource), so that any such resource automatically picks up the preset.

\n\n

Presets appear in view dropdowns alongside individual views, marked as a preset. A preset can bundle:

\n
    \n
  • one or more views to display by default, and
    • \n
  • one or more role definitions to set up (e.g. to be assigned to the space).
    • \n
\n\n

Like resource views, a preset has a stable preset kind (linked via dct:isVersionOf) that persists across superseding versions.

\n\n

This template introduces the proposed term gen:Preset (reusing the existing gen:hasView and gen:hasRole properties) and is a draft for nanodash issue #302.

" . "Publishing a preset" . "Preset: ${name}" . . . . . . . . . "Spaces" . . . "an optional description of what this preset is for" . . "a short name for this preset (e.g. \"Nano Session\")" . . . . "short ID suffix for the preset" . . . "short suffix or existing URI of the preset kind" . . "a role definition to include in this preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/SpaceMemberRole" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "a view to show by default for this preset" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAs7Q2IMbb7C2WzFa98bVwlDMhN3kJ0rrF9cSEybtvLaA/find-embedded-things?type=https://w3id.org/kpxl/gen/terms/ResourceView" . "references - connects a resource (left) to a term it references (right)" . "is a - connects a thing (left) to a class it belongs to (right)" . "has the label - connects a thing (left) to its human-readable label (right)" . "concept - a unit of thought, here a glossary term" . "is defined as - connects a concept (left) to a human-readable definition (right)" . . "Such nanopublications add a glossary term to a resource: an existing concept (identified by an existing URI such as a Wikidata entity) is typed as a SKOS concept, given a preferred label and a human-readable definition, and linked from the resource via dct:references. Opened from a resource page, the resource is pre-filled, so the term shows up in that resource's glossary." . "Adding a glossary term referenced by a resource" . "${label}" . . . . . "Terms" . . . . "the term, identified by an existing URI (e.g. a Wikidata entity)" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . . "a human-readable definition of the term" . . "the preferred label of the term" . . "the resource that references this term" . . . . . . . . . . . . . "AIDA sentence - an English sentence that is Atomic, Independent, Declarative, and Absolute" . "is about - connects a thing (left) to a subject matter that this thing is about (right)" . "is an - connects a thing (left) to a class it belongs to (right)" . "is derived from - connects the statement (left) to a source it is derived from (right)" . . "Type your AIDA sentence here (needs to end with a full stop)" . "http://purl.org/aida/" . "The sentence" . "[\\S ]{5,500}\\." . . "

Such nanopublications use the concept of an AIDA sentence to express a (scientific) statement in an informal or semi-formal manner, and link it to the source it is derived from.

\n\n

AIDA sentences are:

\n\n
    \n
  • Atomic: a sentence describing one thought that cannot be further broken down in a practical way
    • \n
  • Independent: a sentence that can stand on its own, without external references like \"this effect\" or \"we\"
    • \n
  • Declarative: a complete sentence ending with a full stop that could in theory be either true or false
    • \n
  • Absolute: a sentence describing the core of a claim ignoring the (un)certainty about its truth and ignoring how it was discovered (no \"probably\" or \"evaluation showed that\"); typically in present tense
    • \n
\n\n

In addition to the plain AIDA template, this variant records one or more sources (e.g. a paper DOI) the sentence is derived from, via prov:wasDerivedFrom in the assertion itself.

\n\n

You can find more information about AIDA sentences here.

" . "Expressing a literature-derived statement as an AIDA sentence" . "AIDA sentence: ${aida}" . . . . "Claims" . . . "DOI (https://doi.org/10...) or URL of the source the sentence is derived from" . . . . . . . . . . . . . . "identifier of concept or topic the sentence is about" . "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "has URL" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "A computational method, tool, or algorithm producing predictions or scores from biological sequence or structure data. Referenced by computational-prediction observation FDOs (Types 3-6) via mac:hasPredictionMethod. Carries one or more cito:citesAsAuthority URIs identifying the published method descriptions, and an optional schema:url for the software resource. The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring a Computational Method (MAC FDT Type 9)" . "Computational method (${label})" . . . . . . . . . . . . . . . . . . . "MAC" . . "published method authority (DOI or URL)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this method" . . "domain" . . . . . "full URI or short suffix for this computational method FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this method (e.g. \"ESM2 — Meta AI protein language model\")" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "software URL" . "Computational Method" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "has URL" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "An experimental assay or measurement protocol producing empirical observations about biological entities. Referenced by experimental observation FDOs (Type 7) via mac:hasExperimentalMethod. Carries one or more cito:citesAsAuthority URIs identifying the published assay descriptions, and an optional schema:url for the data resource. The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring an Experimental Method (MAC FDT Type 10)" . "Experimental method (${label})" . . . . . . . . . . . . . . . . . . . "MAC" . . "published method authority (DOI or URL)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this method" . . "domain" . . . . . "full URI or short suffix for this experimental method FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this method (e.g. \"Deep mutational scanning — Bloom Lab SARS-CoV-2 RBD\")" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "data resource URL" . "Experimental Method" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "has URL" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "An epidemiological surveillance system or data collection platform through which real-world occurrences of biological entities are documented. Referenced by real-world observation FDOs (Type 2) via mac:hasSurveillanceMethod. Carries one or more cito:citesAsAuthority URIs identifying the published descriptions of the system, and an optional schema:url for the platform. The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring an Observational Method (MAC FDT Type 11)" . "Observational method (${label})" . . . . . . . . . . . . . . . . . . . "MAC" . . "published method authority (DOI or URL)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this method" . . "domain" . . . . . "full URI or short suffix for this observational method FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this method (e.g. \"GISAID — Global Initiative on Sharing All Influenza Data\")" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "platform URL" . "Observational Method" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "Classification of a SARS-CoV-2 lineage according to the WHO risk framework — Variant of Concern (VOC), Variant of Interest (VOI), or Variant Under Monitoring (VUM) — based on assessed public-health risk and virological characteristics. Time-stamped because designation status changes over time. Links via mac:isObservationOf to the Spike RBD Variant FDO it observes. The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring a WHO Variant Classification (MAC FDT Type 8)" . "WHO classification: ${classification} (${classificationDate})" . . . . . . . . . . . . . . . . . . . . . . "MAC" . . "observation-specific authority (DOI or URL)" . . "WHO variant classification" . . . . . "WHO classification date (date)" . . "WHO classification reference URL" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this WHO classification" . . "domain" . . . . . "full URI or short suffix for this WHO classification FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this classification (e.g. \"Alpha WHO classification: VOC\")" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Spike RBD Variant FDO referent URI" . "WHO Variant Classification" . "has WHO classification date" . "has WHO variant classification" . "has WHO classification reference URL" . "is observation of" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "Experimental binding affinity and expression level measurements for a SARS-CoV-2 Spike RBD variant determined by deep mutational scanning (Bloom Lab). One FDO per variant. Carries six measured values: bind (log KD, unitless), delta_bind (vs. wild-type), expr (log MFI, unitless), delta_expr, and confidence scores for bind and expr. Links via mac:isObservationOf to the variant FDO it observes and via mac:hasExperimentalMethod to the Bloom Lab DMS Method FDO (Type 10). The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring a Deep Mutational Scanning Observation (MAC FDT Type 7)" . "DMS observation (bind=${bind}, expr=${expr})" . . . . . . . . . . . . . . . . . . . . . . . . . . . "MAC" . . "observation-specific authority (DOI or URL)" . . "bind (binding affinity, log KD, unitless)" . . "confidence_bind (unitless)" . . "confidence_expr (unitless)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "delta_bind (change vs. wild-type, unitless)" . . "delta_expr (change vs. wild-type, unitless)" . . "free-text description of this DMS observation" . . "domain" . . . "Experimental Method FDO referent URI (Type 10)" . . "expr (expression level, log MFI, unitless)" . . . . "full URI or short suffix for this DMS observation FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this observation (e.g. \"Alpha DMS - Bloom Lab\")" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . "FAIR² Package DOI, FAIR² resource URL, or OSF URL" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Spike RBD Variant FDO referent URI" . "Experimental DMS Observation" . "has bind (binding affinity, log KD, unitless)" . "has confidence_bind (unitless)" . "has confidence_expr (unitless)" . "has delta_bind (vs. wild-type, unitless)" . "has delta_expr (vs. wild-type, unitless)" . "has experimental method" . "has expr (expression level, log MFI, unitless)" . "is observation of" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "Computational prediction of the AgMata aggregation propensity score (unitless) of a SARS-CoV-2 Spike RBD variant, produced by the Bio2Byte AgMata predictor. Sequence-derived: one FDO per variant. Links via mac:isObservationOf to the variant FDO it observes and via mac:hasPredictionMethod to the Bio2Byte Computational Method FDO (Type 9). The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring a Computational Prediction — AgMata (MAC FDT Type 6)" . "AgMata = ${value}" . . . . . . . . . . . . . . . . . . . . . . "MAC" . . "observation-specific authority (DOI or URL)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this AgMata observation" . . "domain" . . . . . "full URI or short suffix for this AgMata observation FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this observation (e.g. \"Alpha AgMata\")" . . "Computational Method FDO referent URI (Bio2Byte AgMata, Type 9)" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . "FAIR² Package DOI or FAIR² ESM resource URL or OSF URL" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "AgMata score (unitless)" . . "Spike RBD Variant FDO referent URI" . "Computational Prediction — AgMata" . "has AgMata score (aggregation propensity)" . "has prediction method" . "is observation of" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "Computational prediction of the Root Mean Square Deviation (RMSD, in Angstroms) of a SARS-CoV-2 Spike RBD variant relative to the wild-type structure, produced by a named computational method (e.g., ESM, AlphaFold II). Links via mac:isObservationOf to the variant FDO it observes and via mac:hasPredictionMethod to the Type 9 method FDO. The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring a Computational Prediction — RMSD (MAC FDT Type 3)" . "RMSD = ${value} A (${predictionMethod})" . . . . . . . . . . . . . . . . . . . . . . "MAC" . . "observation-specific authority (DOI or URL)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this RMSD observation" . . "domain" . . . . . "full URI or short suffix for this RMSD observation FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this observation (e.g. \"Alpha RMSD - AlphaFold II\")" . . "Computational Method FDO referent URI (Type 9)" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . "FAIR² Package DOI or FAIR² resource URL or OSF URL" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "RMSD value (Angstroms)" . . "Spike RBD Variant FDO referent URI" . "Computational Prediction — RMSD" . "has prediction method" . "has RMSD (Root Mean Square Deviation)" . "is observation of" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "Computational prediction of the Solvent Accessible Surface Area (SASA, in square Angstroms) of a SARS-CoV-2 Spike RBD variant, produced by a named computational method (e.g., ESM, AlphaFold II). Links via mac:isObservationOf to the variant FDO it observes and via mac:hasPredictionMethod to the Type 9 method FDO. The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring a Computational Prediction — SASA (MAC FDT Type 4)" . "SASA = ${value} A^2 (${predictionMethod})" . . . . . . . . . . . . . . . . . . . . . . "MAC" . . "observation-specific authority (DOI or URL)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this SASA observation" . . "domain" . . . . . "full URI or short suffix for this SASA observation FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this observation (e.g. \"Alpha SASA - ESM\")" . . "Computational Method FDO referent URI (Type 9)" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . "FAIR² Package DOI or FAIR² resource URL or OSF URL" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "SASA value (square Angstroms)" . . "Spike RBD Variant FDO referent URI" . "Computational Prediction — SASA" . "has prediction method" . "has SASA (Solvent Accessible Surface Area)" . "is observation of" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "Computational prediction of the per-residue confidence score (pLDDT, unitless, 0-100) of a SARS-CoV-2 Spike RBD variant structure, produced by a named computational method (typically AlphaFold II). Links via mac:isObservationOf to the variant FDO it observes and via mac:hasPredictionMethod to the Type 9 method FDO. The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring a Computational Prediction — pLDDT (MAC FDT Type 5)" . "pLDDT = ${value} (${predictionMethod})" . . . . . . . . . . . . . . . . . . . . . . "MAC" . . "observation-specific authority (DOI or URL)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this pLDDT observation" . . "domain" . . . . . "full URI or short suffix for this pLDDT observation FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "label for this observation (e.g. \"Alpha pLDDT - AlphaFold II\")" . . "Computational Method FDO referent URI (Type 9)" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . "FAIR² Package DOI or FAIR² resource URL or OSF URL" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "pLDDT score (0-100, unitless)" . . "Spike RBD Variant FDO referent URI" . "Computational Prediction — pLDDT" . "has prediction method" . "has pLDDT score (0-100, unitless)" . "is observation of" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "cites as authority" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "Real-world detection of a SARS-CoV-2 Spike variant, as reported in GISAID. Carries the occurrence date and the collection location (GeoNames URI), and optionally the canonical GISAID accession. Links via mac:isObservationOf to the Spike RBD Variant FDO it observes, and optionally via mac:hasSurveillanceMethod to the surveillance system (Type 11 FDO). The nanopublication self-materializes (assertion graph is the FDO)." . "Declaring a Real-World Occurrence (MAC FDT Type 2)" . "Real-world occurrence (${occurrenceDate})" . . . . . . . . . . . . . . . . . . . . . . . "MAC" . . "observation-specific authority (DOI or URL)" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this occurrence" . . "domain" . . . . . "full URI (e.g. handle.net) or short suffix for this occurrence FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "canonical GISAID accession (EPI_ISL_XXXXXXX)" . "^EPI_ISL_\\d+$" . . "label or name for this occurrence (e.g. \"Alpha first detected, UK Sept 2020\")" . . "GeoNames feature URI (e.g. https://sws.geonames.org/6269131/)" . . "GISAID-reported collection date" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "surveillance method FDO referent URI" . . "Spike RBD Variant FDO referent URI" . "Real-World Occurrence" . "has collection location" . "has GISAID accession number" . "has occurrence date" . "has surveillance method" . "is observation of" . "TriG (RDF named-graph serialization)" . "has access URL" . "has contact point" . "is described as" . "is part of" . "concerns" . "is a" . "has the label" . "has the link / further info at" . "status update" . . "Publish a status update belonging to an event. Must be linked to one or more spaces (e.g. projects) that the update concerns, and optionally to one or more URLs with further info." . "Publishing a status update for an event" . . . . . . . "Events" . . "description or notes for the status update" . . "event the status update belongs to" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Event" . . "link with further info on the status update" . . "space (e.g. project) the update concerns" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . . . . . . . . . . . . . "short ID suffix for the status update" . . . "title of the status update" . "Status update" . "has contributor" . "has creator" . "is part of" . "data usage license" . "has publisher" . "references" . "has source" . "has domain" . "is a" . "has description" . "has the label" . "Attribution 4.0 International (CC BY 4.0)" . "FAIR² data article (Frontiers in Bioinformatics)" . "FAIR² Data Package DOI" . "implements" . "FAIR Digital Object (FDO)" . "has format" . "has its metadata in" . "is a concrete materialization of" . . "Template for the central anchor of a MAC FAIR Digital Twin: a SARS-CoV-2 Spike RBD variant. All observation FDOs (Types 2–8) link back to an instance of this template via mac:isObservationOf. Per SPS v1.3, every instance also declares its institutional context via dct:isPartOf → a Project FDO referent URI (mandatory; instance-supplied via guided-choice from the project catalogue). The nanopublication self-materializes: it is its own access mechanism, in TriG, under CC BY 4.0." . "Declaring a Spike RBD Variant (MAC FDT Type 1)" . "Spike RBD Variant ${whoVariantName} (${macSeqId})" . . . . . . . . . . . . . . . . . . . . . . . . . . "MAC" . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . . "free-text description of this variant" . . "domain" . . . . . "full URI (e.g. handle.net) or short suffix for this variant FDO" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "canonical GISAID accession (e.g. \"EPI_ISL_601443\")" . "^EPI_ISL_\\d+$" . . "GISAID seq_id — full Spike amino-acid notation (e.g. \"N501Y\")" . "^[ACDEFGHIKLMNPQRSTVWY]\\d{1,3}[ACDEFGHIKLMNPQRSTVWY]$" . . "label or name for this variant (e.g. \"Alpha RBD variant (N169Y)\")" . . "MAC seq_id — RBD amino-acid notation (e.g. \"N169Y\")" . "^[ACDEFGHIKLMNPQRSTVWY]\\d{1,3}[ACDEFGHIKLMNPQRSTVWY]$" . . "Pango lineage (e.g. \"B.1.1.7\", \"B.1.427 + B.1.429\")" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "ROR of the publishing entity" . . "RBD amino-acid sequence (one-letter code, 195 residues)" . "^[ACDEFGHIKLMNPQRSTVWY]{195}$" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "WHO variant name (e.g. \"Alpha\", \"Epsilon\", \"Eta\")" . "Spike RBD Variant" . "has GISAID accession number" . "has GISAID seq_id (full Spike notation)" . "has MAC seq_id (RBD notation)" . "has Pango lineage" . "has parent protein" . "has RBD amino acid sequence (one-letter code, 195 residues)" . "has WHO variant name" . "TriG (RDF named-graph serialization)" . "wild-type SARS-CoV-2 Spike (UniProt P0DTC2)" . "has access URL" . "has contact point" . "is described as" . "is part of" . "concerns" . "is a" . "has the label" . "has the link / further info at" . "agenda item" . . . . "short ID suffix for the agenda item" . . . "Publish an agenda item belonging to an event. Optionally link it to one or more spaces (e.g. projects) that the item concerns, and to one or more URLs with further info." . "Publishing an agenda item for an event" . "Agenda item: ${title}" . . . . . . . "Events" . . "description or notes for the agenda item" . . "event the agenda item belongs to" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Event" . . "link with further info on the agenda item" . . "space (e.g. project) the item concerns" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . . . . . . . . . . . . "title of the agenda item" . "has the archive URL" . . "archive URL, e.g. IPFS-CID" . . "Linking a resource to its archive URL" . "${resource} has archive URL ${archiveUrl}" . . . "resource identifier, e.g. DOI" . . . . "participated as participant in" . . "Declaring the participation as participant in a 3PFF event" . . "3PFF" . . "3PFF event" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAHzCZ-EdJnujIH3P23wQR9C3ySiIJjrp2Ij6df-C9gZg/find-3pff-events" . . . . "is a" . "has as significant person" . "NFDI consortium" . . "Assigning a significant person for an NFDI consortium" . "${entity} has significant person ${person}" . . . . . "select entity (e.g. NFDI consortium)" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . . "choose person" . . . . . . . . "has as significant person" . . "Assigning a significant person for an entity" . "${entity} has significant person ${person}" . . . "select entity (e.g. NFDI consortium)" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . . "choose person" . . . . . "has habitat" . "has the nature or genre of the resource." . "is an instance of" . "has the free-text comment" . "is the same as" . "links the organism to the environment" . "refers to the relation" . "refers to - links an association to its subject" . "has the time stamp - points to the date and time associated with this relation or organism (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in" . "an association of an organism to an environment" . "has the depth" . "has the dissolved oxygen concentration" . "has the life cycle stage" . "has the location coordinates - points to the location coordinates associated with this relation or organism (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in" . "has the occurrence - links an organism to a record of a specific occurrence of it" . "has the salinity" . "is used as defined in" . "has the name - links a taxon usage to a taxon name" . "has the temperature" . . "

Such a nanopublication expresses an association between an organism instance and an aquatic environment, expressing that the given organism was observed in the specified type of environment, including information about salinity, temperature, and depth.

" . "Expressing an association between an organism and an aquatic environment" . . "Organism of ${taxonname} - ${relation} - ${environment}" . . . . . . . . . . . . . . . . . . . . . . . . "Biodiversity" . . . "any existing URI identifier of associated media" . . . "this association" . . "short explanation related to the above statement" . . "name or URI of the continent" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=10&search=](https://www.wikidata.org/w/api.php?action=wbsearchentities&language=ja&format=json&limit=10&search=" . . "lat/long coordinates in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5'" . "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" . . "select the country" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=10&search=](https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=10&search=" . . "depth below sea level in meters" . . "the environment to be associated with the organism" . "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" . . "select the life cycle stage of the organism; leave blank if unknown" . . . "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." . . "the organism" . . "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" . . "dissolved oxygen concentration in ml/l" . . "the relation between the organism and the environment" . . "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" . . "salinity" . . "sampling protocol or method" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=10&search=](https://www.wikidata.org/w/api.php?action=wbsearchentities&language=ja&format=json&limit=10&search=" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "the taxon concept" . . "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" . "(https://doi.org/|https://treatment.plazi.org/id/).+" . . "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" . "https://vodex.petapico.org/nidx/query?rows=100&q=label:" . . "temperature in °C" . . "time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'" . "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" . . "select the type of the resource" . . . "name or URI of the waterbody" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=10&search=](https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=10&search=" . "has the associated media" . "has the continent" . "has sampling protocol" . "has the waterbody" . "has country" . "has the end date" . "has the start date" . "is a" . "has name" . "is further described by" . "located in" . "3PFF training" . "3PFF workshop" . "FAIR awareness" . "FAIR convergence" . "FIP consultation" . "FIP event" . "FIP introduction" . "hybrid event" . "in-person event" . "M4M consultation" . "M4M I-ADOPT" . "M4M introduction" . "M4M schema" . "M4M vocabulary" . "Orchestration" . "virtual event" . "has event assistant" . "has event facilitator" . "has event organizer" . "has event sponsor" . "has participating community" . "Event" . "Space" . "has as admin" . . "an admin of the event" . . "Defining a 3PFF event as a Space" . . . . . . . . . . . . . . . . . . . "3PFF" . . . "event assistant" . . "community" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Community&searchterm=" . "date of the event (e.g. 2020-12-31)" . "[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]" . . "end date (and optionally time)" . . . . "short name, used as URI suffix" . "https://w3id.org/fair/3pff/" . "3 PFF event" . . "event type" . . . . . "event facilitator" . . "hours" . . "location of the event (URL or name)" . . "the name of the event" . . "online resource" . . "organizer of the event (ROR, URL or name)" . . "3PFF type" . . . . . . . . . . . . . "workshop type" . . . . "sponsor of the event (ROR or name)" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "start date (and optionally time)" . . "has duration in hours" . "is maintained by" . "has domain" . "software" . "was created on" . "was developed by" . "was published on" . "was submitted for publication on" . "has the description" . "has version" . "is referenced by" . "has license" . "is published by" . "has reference" . "is owned by" . "has keywords" . "has the title" . "has software category" . "is a" . "is hosted by" . "is a version of" . "has programming language" . "has dependency" . "has TRL level" . "has as funding source" . "has sustainability plan" . "has container reference" . "has deployment" . "has quality assurance (QA)" . "has authentication scheme" . "has source code repository" . "has component structure" . "has component or software input" . "conforms to standard" . "has documentation" . . "TRL of the software" . . . "URI or manual input of software TRL" . . "This template can be used to produce a machine actionable metadata record to report the metadata of a scientific software or tool in accordance with the FAIR4RS principles." . "Template for describing a Research Software in line with the FAIR4RS Principles" . "Software: ${title}" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Research Software" . . . "URI or manual input of authentication scheme" . . "URI of changelog" . . "component structure" . . . "URI or manual input of component structure" . . "component types of the software" . . . "component types of the software" . . "date the software was created" . . "date the software was published" . . "date the software was submitted for publication" . . "URI or manual input of software dependency" . . "URI or manual input of deployment type" . . "description of the software" . . "URI of the developer(s) of the software (e.g., ORCID)" . . "URI or manual of software documentation" . . "the software domain" . . . "software domain URI or manual input" . . "URI or manual input of external services called" . . "the software's funding source" . . . "URI or manual input of the software's funding source" . . "URI of the platform hosting the software" . . "URI of the image container / docker" . . "software and / or component input(s)" . . "the intended use of the software" . . "DOI or URI of resource(s) referencing the software" . . "the URI of the previous software version" . . "the URI/name of related keywords" . . "the license of the software" . . "URI of the maintainer(s) of the software (e.g., ORCID)" . . "software and / or component output(s)" . . "URI of the owner(s) of the software (e.g., ORCID)" . . "the programming language of the software" . . "URI/name of the publisher of the software (e.g., ORCID)" . . "URI or manual input of software QA" . . "DOI or URI of related reference(s)" . . "URI or manual input of the standard(s) the software conforms to" . . "URI of the software" . . "URI of the source code repository" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "URI or manual input of sustainability plan" . . "the title of the software" . . "has trusted repository indication" . . . "URI or manual trusted repository indication" . . "the category of the software" . . "the version of the software" . "has component type" . "has has component or software output" . "has trusted repository indicator" . "has changelog" . "has intended use" . "has external services called" . "is a" . "about" . "declared by" . "semantic type declaration" . "declares current use of" . . "Template for defining a list of semantic type declarations by a community." . "Defining a list of Semantic Type Declaration" . . . . . "community" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Community&searchterm=" . . . . "semantic type declaration" . . "semantic type" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2Fhttps://w3id.org/fair/fip/terms/Digital-Object-Type&searchterm=" . . . . . . . . . . . . . . . . . . "URI of of the branch of the used vocabulary" . "has guest" . . "Declaring to be a guest of a space" . "${space} has guest: ${user}" . . "Events" . . "choose the space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . "choose user" . . "has host" . . "Declaring to be host of a space" . "${space} has host: ${user}" . . "Events" . . "choose the space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . "choose user" . . "is sub-space of" . . "Such a nanopublication declares that one Space is a sub-space of another. The relation is admitted into the validated space-state once admins of both child and parent have attested to it (either by a single dual-admin publisher, or by two separate single-side declarations)." . "Declaring a sub-space relation" . "${child} is sub-space of ${parent}" . . "Spaces" . . "choose the child Space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . "choose the parent (super-) Space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . "conforms to" . "is a" . "has value" . "fragment selector" . "specific resource (image with region)" . "has selector" . "has source image" . . "This template describes a morphological character used for identifying a taxon, optionally linking to image evidence with region annotations or direct image URLs." . "Describing a morphological identification character" . "${characterLabel}" . . . . "Biodiversity" . . . "short name for the character, used as URI suffix" . "http://purl.org/nanopub/api/find_signed_things?type=https://w3id.org/spaces/marine-biodiversity/r/ontology/MorphologicalCharacter&searchterm=" . . "URL of the image" . . "a selector" . . "URL of the source image (e.g. a Zenodo file URL)" . . "media fragment selector (e.g. xywh=150,200,80,60)" . . "an image region" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "the organism taxon, e.g. a species" . "https://vodex.petapico.org/nidx/query?rows=100&q=label:" . "has identification character" . "is represented in" . "has the text" . "see also (has root nanopub)" . . "Testing root nanopub placeholder" . "${message}" . . . "Comments" . . "your plain-text message" . . "root nanopub" . . . . . . . "conforms to the profile" . "is a" . "has the label" . "FAIR Digital Object" . "has the data" . . "Such a nanopublication declares a basic kind of FDO, with or without data reference." . "Creating a basic FDO" . . . . . . . "FDO" . . "URL of the data file" . . . . "short ID used as URI suffix" . . "short, human-readable label for the FDO" . . "select FDO (or other thing) as source" . "http://purl.org/nanopub/api/find_signed_things?type=https://w3id.org/fdof/ontology%23FAIRDigitalObject&searchterm=" . . . . . . . . . . . . . . . . . . . . . . . . . "FDO type" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAydXkXhyL-uFqfW6F9DoM6Eu4x0bjux2JsdzQwy9stJM/find-fdo-subclasses" . "Basic FDO Profile" . "was derived from" . . . "1" . "1" . . . "1" . . . . . . . . . . . . . "Basic FDO Profile" . . "is called - connects a formal identifier (left) to an informal human-readable name (right)" . "is a subclass of - states that all instances of the class/type to the left are also instances of the class/type to the right" . "is exactly the same as" . "is defined as follows: - connects an identifier (left) to a human-readable definition (right)" . "is related to - connects two things that are somehow related" . "FAIR Digital Object (FDO)" . . "Such a nanopublication defines a new subclass of a FAIR Digital Objects (FDO) that can then be used as type of specific FDOs." . "Defining a type of an FDO" . . . . . . "FDO" . . . "definition of the FDO type" . . . . "short name, used as URI suffix" . . "the name of the FDO type" . . "URI of a related entity" . "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . . "URI of a class/type that should be treated as fully synonymous" . . . . . . . . . . . . . . . . . . . . "news article" . "has the body content" . "was published on" . "has the title" . "is part of" . "is available at" . . "Publish a news article to a Space" . "${headline}" . . . . . . . . . . . . . . . . . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . . . . . . . . . "has habitat" . "is an" . "has the free-text comment" . "association of an organism taxon to an environment" . "links the taxon to the environment" . "refers to the relation (between taxon and environment)" . "refers to" . "refers to the taxon's life cycle stage" . "is used as defined in" . "has the name - links a taxon usage to a taxon name" . . "Such a nanopublication expresses an association between an organism taxon (e.g. a species) and an environment, for example expressing that the organisms of the given species inhabit the specified environment, represented by EUNIS identifier." . "Expressing an association between an organism taxon and an environment (according to EUNIS)" . . "${taxonname} - ${relation} - ${environment}" . . . . . . . . . "Biodiversity" . . . . "this association" . . "short explanation related to the above statement" . . "the environment (via EUNIS identifier)" . "https://discodata.eea.europa.eu/sql?query=SELECT%20concat(%27https%3A%2F%2Feunis.eea.europa.eu%2Fhabitats%2F%27%2C%5Bid_habitat%5D)%20as%20%5B%40id%5D%2C%20%5Bscientific_name%5D%20AS%20label%2C%20%5Bhabitat_description%5D%20as%20description%20FROM%20%5BEUNIS%5D.%5Blatest%5D.%5BHabitat_Information%5D%20WHERE%20%5Bhabitat_category%5D%20LIKE%20%27%25EUNISrev%25%27%20AND%20concat(%5Bscientific_name%5D%2C%27%20%27%2C%5Benglish_name%5D%2C%27%20%27%2C%5Beunis_habitat_code%5D)%20LIKE%20%27%25 %25%27&p=1&nrOfHits=50&mail=null&schema=null" . . "the life cycle stage" . . . "the type of relation between the taxon and the environment" . . "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "a taxon concept" . . "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" . "(https://doi.org/|https://treatment.plazi.org/id/).+" . . "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" . "https://vodex.petapico.org/nidx/query?rows=100&q=label:" . "has subject" . "is supported by" . "was completed on" . "is a" . "has the label" . . "Describing a synthesis across multiple replication outcomes with practical recommendations" . "Science Live Research Synthesis" . . . . . . . . . . "FORRT" . . "Conclusion of the synthesis" . . "Conditions of the synthesis" . . . . "label" . . "Limitations of the synthesis" . . "Recommendations" . . "URI of the source supporting the synthesis" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "short URI suffix for outcome ID" . . "topic" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . "has the conditions" . "has the limitations" . "has the recommendation" . "has the synthesis conclusion" . . "Testing EUNIS lookup" . . . "https://discodata.eea.europa.eu/sql?query=SELECT%20concat(%27https%3A%2F%2Feunis.eea.europa.eu%2Fhabitats%2F%27%2C%5Bid_habitat%5D)%20as%20%5B%40id%5D%2C%20%5Bscientific_name%5D%20AS%20label%2C%20%5Bhabitat_description%5D%20as%20description%20FROM%20%5BEUNIS%5D.%5Blatest%5D.%5BHabitat_Information%5D%20WHERE%20%5Bhabitat_category%5D%20LIKE%20%27%25EUNISrev%25%27%20AND%20concat(%5Bscientific_name%5D%2C%27%20%27%2C%5Benglish_name%5D%2C%27%20%27%2C%5Beunis_habitat_code%5D)%20LIKE%20%27%25 %25%27&p=1&nrOfHits=50&mail=null&schema=null" . . . . "is a" . "for action" . "is granted to" . "distribute" . "has permission" . "reproduce" . "grants access to dataset" . "use" . "granted at time" . "under ODRL policy" . . "Records that a specific DID was granted access to a dataset under an ODRL policy. Serves as an immutable audit trail for data access in the FAIR2Adapt project." . "ODRL Access Grant for FAIR Data" . "Access grant: ${datasetUri} -> ${assigneeDid}" . . . . . . . "ODRL" . . . "DID of the requester (e.g. did:web:researcher.example.org)" . . "URI of the dataset" . . . "Timestamp of access grant" . . . . "Grant identifier" . . . . . . . . "Granted action" . . . . . . . . . "Nanopub URI of the ODRL policy this grant is under" . . . . . . . . . . . . . . . . "is a" . "for action" . "is granted to" . "distribute" . "has permission" . "reproduce" . "grants access to dataset" . "use" . "granted at time" . "under ODRL policy" . . "Records that a specific DID was granted access to a dataset under an ODRL policy. Serves as an immutable audit trail for data access in the FAIR2Adapt project." . "ODRL Access Grant for FAIR Data" . "Access grant: ${datasetUri} -> ${assigneeDid}" . . . . . . . "ODRL" . . . "DID of the requester (e.g. did:web:researcher.example.org)" . . "URI of the dataset" . . . "Timestamp of access grant" . . . . "Grant identifier" . . . . . . . . "Granted action" . . . . . . . . . "Nanopub URI of the ODRL policy this grant is under" . . . . . . . . . . . . . . . . "is a" . "for action" . "is granted to" . "distribute" . "has permission" . "reproduce" . "grants access to dataset" . "use" . "granted at time" . "under ODRL policy" . . "Records that a specific DID was granted access to a dataset under an ODRL policy. Serves as an immutable audit trail for data access in the FAIR2Adapt project." . "ODRL Access Grant for FAIR Data" . "Access grant: ${datasetUri} -> ${assigneeDid}" . . . . . . . "ODRL" . . . "DID of the requester (e.g. did:web:researcher.example.org)" . . "URI of the dataset" . . . "Timestamp of access grant" . . . . "Grant identifier" . . . . . . . . "Granted action" . . . . . . . . . "Nanopub URI of the ODRL policy this grant is under" . . . . . . . . . . . . . . . . "has the description" . "is a" . "has the label" . "has the alternative ID" . "Alliance - (with focus on bringing units together)" . "Community - (with focus on exchange)" . "Division - (with focus on structuring into sub-units)" . "Group - (with focus on getting work done)" . "Organization - (with focus on formal vessel)" . "Outlet - (with focus on outreach)" . "Program - (with focus on coordination)" . "Space" . "has as admin" . "has the root definition" . . "an admin of the Space" . . "alternative URI" . . "Such nanopublications defines an open-ended Space, i.e. a group, program, outlet, or community." . "Defining an open-ended Space (with root definition)" . . . . . . . . "Spaces" . . "the description of the Space" . . "the name of the Space" . . . "Space identifier" . "https://w3id.org/spaces/" . "https://w3id.org/spaces/" . . . . . . . . . . . . . . . . . . . . . . . . . . . "type of the Space" . . . . . . . . "has the original source" . "is a" . "has the label" . . "choose AIDA sentence of claim" . "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fpurl.org%2Fpetapico%2Fo%2Fhycl%23AIDA-Sentence&searchterm=" . . "Declaring an original claim according to FORRT" . . . . . . "FORRT" . . . . "Short URI suffix as claim ID" . "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fpurl.org%2Fpetapico%2Fo%2Fhycl%23AIDA-Sentence&searchterm=" . . "Type of FORRT claim" . . . . . . . . . "label of the claim, to find it later" . . "source URI" . . . . . . . . . . . . . . . . . "FORRT claim" . "corresponds to - linking to an AIDA statement: an English sentence that is Atomic (describing a single thought), Independent (can be understood as a single sentence without further context), Declarative (complete sentence ending with a full stop), and Absolute (describing the core of a claim ignoring certainty and source)" . "computational performance (Computational & Performance)" . "data governance (access control, licensing, FAIR compliance)" . "data quality (preprocessing, validation, normalization)" . "descriptive pattern (distribution, trend, proportion)" . "model performance (accuracy, F1 score, evaluation metrics)" . "scalability (Computational & Performance)" . "statistical significance (significant difference, relationship, or effect)" . "has contributor" . "has creator" . "has version" . "has publication date" . "uses language" . "data usage license" . "has data usage license" . "has publisher" . "has domain" . "is a" . "has description" . "has the label" . "has funder" . "has project" . "implements" . "FAIR Digital Object (FDO)" . "has the format" . "has its metadata in" . "is a concrete materialization of" . . "access URL" . . "This nanopublication defines a research software development plan template." . "Declaring a Research Software Development Plan" . . . . . . . . . . . . . . . . . . . . "Research Software" . . "class URI" . . . "contact email" . . "ORCID of contributor" . . "ORCID of creator" . . "publication date" . . "description" . . "domain" . . . "URI to earlier version (nanopublication)" . . "end date" . "has end date" . . . . "full URI (e.g. handle.net) or short suffix" . . "FAIR Implementation Profile" . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" . . "MIME type, such as \"text/csv\" or \"application/trig\"" . . . "ROR of funder institution" . . "label or name for this FDO" . . "language" . . . "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FData-usage-license&searchterm=" . . "materialization URI" . . "project" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" . . "the ROR of the publishing entity" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "start date" . . "version" . "has access URL" . "has contact point" . "has end date" . "has start date" . "has the text" . "is a" . "is about" . "is authored by" . "testimonial" . . "Give a testimonial" . . . . . . "author of the testimonial" . . . . . . . . . . . . . . . "entity the testimonial is about" . . . "this testimonial" . . "text of the testimonial" . "has the comment" . "has the label" . "is relevant for" . . "Expressing something is relevant for something" . . . . . . "comment about why this is relevant" . . "the entity that has the relevant resource" . . "the resource being relevant for the entity" . . "label of the resource" . . . . . . . . . . . . "has the title" . "is a" . "activated view display" . "deactivated view display" . "view display" . "applies to - applies only to this space, and not to parts of it, etc." . "applies to all instances of" . "applies to the namespace" . "is a display for" . "is a display of the view" . . "class URI, overriding view definition" . . "namespace (URI prefix)" . . "choose resource" . . "Displaying a view for a maintained resource" . "${resource} displays view: ${view}" . . . . . . . . . "Spaces" . . . "this" . . "select whether this display is activated or deactivated" . . . . . "choose the maintained resource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/MaintainedResource" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "title, overriding view definition" . . "choose the view" . . "https://w3id.org/np/l/nanopub-query-1.1/api/RAzSFlOt0yD9b-GSNifkGoKfakXEYQ7f6Ic3OMwuJfwts/find-views?appliedViewClass=https://w3id.org/kpxl/gen/terms/MaintainedResource" . "simple message view" . "has the abstract" . "has the publication date" . "includes - links a thing to a part it includes" . "is part of" . "has the title" . "has" . "is in journal issue" . "has end page" . "has start page" . "is in journal volume" . "book chapter - A defined chapter of a book, usually with a separate title or number." . "in-use paper - A scholarly work that describes applied and validated solutions such as software tools, systems or architectures that benefit from the use of the technology of a particular scholarly domain." . "journal editorial - An editorial published in an issue of a journal." . "methods paper - A scholarly work detailing a method, procedure or experimental protocol employed in a particular scholarly domain." . "position paper - A scholarly work that reports a particular intellectual position or viewpoint regarding a particular scholarly topic." . "research paper - A scholarly work that reports original research contributions addressing theoretical, analytical or experimental aspects of a particular scholarly domain." . "resource paper - A scholarly work that describes resources developed to provide experimental materials or facilities, support a research hypothesis, to provide answers to a research question, or that have contributed to the generation of novel scientific work." . "review paper - A scholarly work that surveys the state of the art of topics central to a particular subject or relating to a specific domain (e.g. the scope of a certain journal or conference)." . "scholarly work - A general term that includes all other listed types" . "has the affiliation" . "has the email address" . "is a" . "has the name" . . "the abstract of the article" . . "Select organization from above" . . . "Select author from above" . . . . "DOI of the article (starting with https://doi.org/10...)" . "https://doi\\.org/10.+" . . "The type of the article" . . . . . . . . . . . . "Such a nanopublication contains the main high-level metadata about a scholarly article, including title, authors, and links to other nanopublications." . "Describing core article metadata" . "Article: ${title}" . . . . . . . . . . . . . . . . . "Journals" . . . "ORCID ID of the author (starting with https://orcid.org/...)" . "https://orcid\\.org/[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{3}[0-9X]" . . "email address of author" . "[A-Za-z0-9._+\\-\\']+@[A-Za-z0-9.\\-]+\\.[A-Za-z]{2,}" . . "this author list" . . "full name of author" . . "Select author to specify an email address for" . . . "date, e.g. \"2023-07-21\", \"2023-07\", or \"2023\"" . "(1[0-9][0-9][0-9]|20[0-2][0-9])(-(1[0-2]|0[1-9])(-(3[0-1]|[1-2][0-9]|0[1-9]))?)?" . . "issue number" . . "ISSN of the journal (e.g. \"2451-8492\")" . "http://id.crossref.org/issn/" . "the journal with ISSN" . . "Title of the journal" . . "has at position ${number}" . "http://www.w3.org/1999/02/22-rdf-syntax-ns#_" . "includes as element number" . "[1-9][0-9]*" . . "ROR identifier (https://ror.org/...) or short local URI suffix (e.g. \"stanford\")" . "(https://ror\\.org/[0-9a-z]+|[a-zA-Z0-9_\\-]+)" . . "The name of the organization" . . "end page number" . . "start page number" . . "a part belonging to this article, e.g. a nanopublication" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "The title of the article" . . "volume number" . "participates in" . . "The creator of such a nanopublication declares to be a participant in the specified Space." . "Declaring the participation in a Space" . "${participant} is participant in ${space}" . . "Events" . . "choose the participant" . . . "choose space (e.g. event)" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . "read action" . "has reader" . "has read date" . "has the read item" . "is a" . "has comment" . "has the label" . . "The creator of such a nanopublication declares to have read a specific item (paper, book, article, etc.)." . "Declaring to have read something" . "Read: ${label}" . . . . . . . "Reading" . . . "comment or note about the reading" . . "URI of the read item (e.g. DOI URL)" . . "short label (e.g. 'Doe et al. 2024')" . . "date read (YYYY, YYYY-MM, or YYYY-MM-DD)" . "[0-9]{4}(-[0-9]{2}(-[0-9]{2})?)?" . . . "this" . . "who read it" . . . . . . . . . . . . . . . . . . . . . . "is about" . "has the title" . "is a" . "paragraph" . "has the content" . "has the position string" . . "Create a paragraph item" . "${title}" . . . . . . . "the full text of the paragraph" . . "entity this is part of" . . . . "short URI suffix" . . . "string determining the order of the paragraphs" . . . . . . . . . . . . . . . . . . "title of the paragraph" . "is part of" . "has the title" . "is a" . "paragraph" . "has the content" . "has the position string" . . "Publish a paragraph item for a profile" . "${title}" . . . . . . . "text content of the paragraph" . . . . "short URI suffix" . . . "string determining the order of the paragraphs" . . "choose the space" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . . . . . "the title of the paragraph" . "was completed on" . "is a" . "has the label" . . "Declare a replication study outcome according to FORRT with machine-readable evidence from TIB Knowledge Loom: links to dtreg JSON-LD analysis proofs, statistical analysis types, and key numerical results. Combines FORRT's validation framework with Knowledge Loom's reproducible research infrastructure." . "Declaring a replication study outcome according to FORRT with Knowledge Loom evidence" . . . . . . . . . . . . . . "FORRT" . . "describe the overall conclusion about the original claim" . . "choose confidence level" . . . . . . . "choose completion date" . . . "describe the evidence that supports your conclusion" . . "choose the statistical analysis type" . . . . . . . . . . . . . "Key numerical result (e.g. F=7.285, p<0.001)" . . "Machine-readable proof URL (dtreg JSON-LD file in the Loom record)" . . "plain-text label for the outcome" . . "describe what limits the conclusions of the study" . . . . "short URI suffix for outcome ID" . . "repository URL" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "choose study" . "http://purl.org/nanopub/api/find_signed_things?type=https://w3id.org/sciencelive/o/terms/FORRT-Replication-Study&searchterm=" . . "choose validation status" . . . . . . "contradicted" . "FORRT Replication Outcome" . "high - Strong evidence, mostly agrees with original" . "inconclusive" . "low - Limited evidence, significant disagreement" . "moderate - Adequate evidence, partial agreement" . "not tested" . "partially supported" . "validated" . "very high - Extensive evidence, high agreement with original" . "very low - Minimal evidence, major disagreement" . "Algorithm Evaluation" . "Class Discovery (clustering)" . "Class Prediction" . "Correlation Analysis" . "Data Analysis" . "Data Preprocessing" . "Descriptive Statistics" . "Factor Analysis" . "Group Comparison (t-test, ANOVA, etc.)" . "Multilevel Analysis (mixed/hierarchical models)" . "Regression Analysis" . "has the analysis type" . "has the conclusion" . "has the confidence level" . "has the evidence" . "has the key result" . "has the limitations" . "has the machine-readable proof" . "has the repository" . "has the validation status" . "is an outcome of" . "is a" . "has the label" . "is related to" . . "Declare a replication study design according to FORRT with structured computational metadata from the Knowledge Loom: software methods, packages, runtime environment, input data sources, analysis scripts, and links to machine-readable analysis proofs (dtreg JSON-LD). Combines FORRT's replication framework with Knowledge Loom's reproducible research infrastructure." . "Declaring a replication study design according to FORRT with Knowledge Loom metadata" . . . . . . . . . . . . . . . . . "FORRT" . . "choose FORRT claim" . "http://purl.org/nanopub/api/find_signed_things?type=https://w3id.org/sciencelive/o/terms/FORRT-Claim&searchterm=" . . "Describe any deviations from original methodology." . . "Choose the scientific discipline" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . . "choose terms as related keywords" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" . . "Input data description (e.g. 229 rows x 8 columns)" . . "Input data source URL" . . "Knowledge Loom record URL (GitLab/Github repo)" . . "Software method / function used (e.g. stats::aov())" . . "Software package and version (e.g. lme4 1.1-35.5)" . . "Runtime environment and version (e.g. R 4.4.1)" . . "Analysis script URL (R/Python script)" . . "label/name of replication study" . . "Describe how the claim is reproduced/replicated." . . "Describe what part of the claim is reproduced/replicated." . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "short URI suffix for study ID" . . "choose the study type" . . . . . "FORRT Replication Study" . "Replication Study - replication with different methodology or conditions" . "Reproduction/Replication Study - study that is both, reproduction and replication" . "Reproduction Study - direct reproduction: same methodology, same tools" . "executes the software method" . "has the analysis script" . "has the deviation" . "has the discipline" . "has the input data description" . "has the input data source" . "has the Knowledge Loom record" . "has the methodology" . "has the runtime environment" . "has the scope" . "targets the claim" . "uses the software package" . "news article" . "has the body content" . "was published on" . "has the title" . "is part of" . "is available at" . . "Publish a news article to a Space" . "${headline}" . . . . . . . . . . . . . . . . . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . . . . . . . . "conforms to" . "is a" . "has value" . "has the label" . "fragment selector" . "specific resource (image with region)" . "has selector" . "has source image" . . "This template describes a morphological character used for identifying a taxon, optionally linking to image evidence with region annotations or direct image URLs." . "Describing a morphological identification character" . "${characterLabel}" . . . . . . "Biodiversity" . . . . "short name for the character, used as URI suffix" . . "human-readable description of the morphological character" . . "URL of the image" . . "a selector" . . "URL of the source image (e.g. a Zenodo file URL)" . . "media fragment selector (e.g. xywh=150,200,80,60)" . . "an image region" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "the organism taxon, e.g. a species" . "https://vodex.petapico.org/nidx/query?rows=100&q=label:" . "morphological character" . "has identification character" . "is represented in image" . "is a" . "activated view display" . "deactivated view display" . "view display" . "applies to - only applies to this user, and not to pages that are part of it, etc." . "is a display for" . "is a display of the view" . "Planned event attendance view" . "View of read papers by user" . "Latest nanopubs by user view" . "List of all Spaces for given agent" . . "Displaying a view on a user page" . "${resource} displays view: ${view}" . . . . . . "Spaces" . . . "this" . . "select whether this display is activated or deactivated" . . . . . "choose the user" . . . . . . . . . . . . . . . . . . . . "choose the view" . . . . . . "https://w3id.org/np/l/nanopub-query-1.1/api/RAzSFlOt0yD9b-GSNifkGoKfakXEYQ7f6Ic3OMwuJfwts/find-views?appliedViewClass=https://w3id.org/kpxl/gen/terms/IndividualAgent" . "Simple message view" . "is a" . "Offer - data available under conditions" . "Set - general policy statement" . "action" . "Attribute" . "attributed to" . "Commercialize" . "Compensate" . "with constraint" . "Derive" . "Distribute" . "has duty" . "equals" . "constraint on" . "Modify" . "Obtain Consent" . "operator" . "has permission" . "Present" . "has prohibition" . "Purpose" . "Reproduce" . "must be" . "Sell" . "applies to dataset" . "Use" . "Academic Research" . "Non-Commercial Research" . "Public Benefit" . "Scientific Research" . . "Defines an ODRL policy for controlling access to a FAIR dataset. Specifies permitted actions (with purpose constraints), prohibited actions, and attribution duties. Use this template to publish machine-readable access conditions for private research data." . "ODRL Access Policy for FAIR Data" . "ODRL policy: ${datasetUri}" . . . . . . "Access Control" . "FAIR2Adapt" . "ODRL" . . . "URI of party to attribute (e.g. https://fair2adapt-eosc.eu)" . . . . . . . . . . . . . . . "URI of the dataset this policy applies to" . "https://fair2adapt.eu/data/" . "fair2adapt-data" . . "Required duty action" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Permitted action" . . . . . . . . "Type of ODRL policy" . . . . . "URI of the policy" . "https://fair2adapt.eu/policy/" . "fair2adapt-policy" . . . . . . . . . . . . . . "Prohibited action" . . . . . . "Required purpose for access" . . . . . . . . . . . "is a" . "for action" . "is granted to" . "has permission" . "grants access to dataset" . "granted at time" . "under ODRL policy" . . "Records that a specific DID was granted access to a dataset under an ODRL policy. Serves as an immutable audit trail for data access in the FAIR2Adapt project." . "ODRL Access Grant for FAIR Data" . "Access grant: ${datasetUri} -> ${assigneeDid}" . . . . . . . "Access Grant" . "FAIR2Adapt" . "ODRL" . . . "DID of the requester (e.g. did:web:researcher.example.org)" . . "URI of the dataset" . "https://fair2adapt.eu/data/" . "fair2adapt-data" . . . "Timestamp of access grant" . . . . "Grant identifier" . . . . . . . . "Granted action" . . . . . . . . . "Nanopub URI of the ODRL policy this grant is under" . "https://w3id.org/np/" . "nanopub" . . . . . . . . . . . . . . . . "is a" . "for action" . "is granted to" . "grants access to dataset" . "granted at time" . "under ODRL policy" . . "Records that a specific DID was granted access to a dataset under an ODRL policy. Serves as an immutable audit trail for data access in the FAIR2Adapt project." . "ODRL Access Grant for FAIR Data" . "Access grant: ${datasetUri} → ${assigneeDid}" . . . . . . . "Access Grant" . "FAIR2Adapt" . "ODRL" . . . "DID of the requester (e.g. did:web:researcher.example.org)" . . "URI of the dataset" . "https://fair2adapt.eu/data/" . "fair2adapt-data" . . "Timestamp of access grant" . . . . "Grant identifier" . . "Granted action" . . . . . "Nanopub URI of the ODRL policy this grant is under" . "https://w3id.org/np/" . "nanopub" . . . . . . . . . . . . . . . . . . . . "is a" . "Offer - data available under conditions" . "Set - general policy statement" . "allows/prohibits action" . "Commercialize" . "with constraint" . "Derive" . "Distribute" . "has duty" . "Modify" . "has permission" . "Present" . "has prohibition" . "Reproduce" . "Sell" . "applies to dataset" . "Use" . "Academic Research" . "Non-Commercial Research" . "Public Benefit" . "Scientific Research" . . "Defines an ODRL policy for controlling access to a FAIR dataset. Specifies permitted actions (with purpose constraints), prohibited actions, and attribution duties. Use this template to publish machine-readable access conditions for private research data." . "ODRL Access Policy for FAIR Data" . "ODRL policy: ${datasetUri}" . . . . . . . "Access Control" . "FAIR2Adapt" . "ODRL" . . . "URI of party to attribute (e.g. https://fair2adapt-eosc.eu)" . . "URI of the dataset this policy applies to" . "https://fair2adapt.eu/data/" . "fair2adapt-data" . . "Permitted action" . . . . . . . . "Type of ODRL policy" . . . . . "URI of the policy" . "https://fair2adapt.eu/policy/" . "fair2adapt-policy" . . "Prohibited action" . . . . . . "Required purpose for access" . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Attribution-NonCommercial-ShareAlike 4.0 International" . "Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)" . "Attribution 4.0 International (CC BY 4.0)" . "CC0 1.0 Universal (CC0 1.0) Public Domain Dedication" . "has the default license" . . "This template is used to set the default license with which the nanopublications of a User are published. (plus non-commercial)" . "Set the default license of a User" . . . "select the license here" . . . . . . . . . . . "has the title" . "is a" . "activated view display" . "10/12 columns" . "2/12 columns" . "3/12 columns" . "4/12 columns" . "5/12 columns" . "6/12 columns" . "7/12 columns" . "8/12 columns" . "9/12 columns" . "10/12 columns" . "12/12 columns" . "deactivated view display" . "view display" . "only applies to resource" . "applies to all instances of" . "applies to the namespace" . "has the display width" . "has the page size" . "has the structural position" . "is a display for" . "is a display of the view" . . "class URI, overriding view definition" . . "namespace (URI prefix)" . "namespace, overriding view definition" . . "resource URI" . . "Declare a view that should be displayed for the given resource (e.g. space, user, maintained resource)." . "Displaying a view for a resource" . "${resource} displays view: ${view}" . . . . . . . . . . . . "Spaces" . . . "this" . . "select whether this display is activated or deactivated" . . . . . "page size in number of entries, overriding view definition" . "[0-9]+" . . "the ID of the resource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/MaintainedResource" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Space" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "structural position id like '5.5.thing', overriding view definition" . "[1-9]\\.[1-9]\\..*" . . "title, overriding view definition" . . "choose the view" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAs7Q2IMbb7C2WzFa98bVwlDMhN3kJ0rrF9cSEybtvLaA/find-embedded-things?type=https://w3id.org/kpxl/gen/terms/ResourceView" . . "display width, overriding view definition" . . . . . . . . . . . "has author" . "has the presentation date" . "is described as" . "is part of" . "is a" . "has the label" . "see also" . "is about" . "poster presentation" . . "Publish metadata about a poster presentation, including title, authors, date, event, and optionally a link to the poster or related resources." . "Publishing information about a poster presentation" . "Poster: ${title}" . . . . . . . . . "Posters" . . "an author of the poster" . . . "date of the poster presentation" . . . "abstract or description of the poster" . . "event or conference" . "https://w3id.org/np/l/nanopub-query-1.1/api/RAyMrQ89RECTi9gZK5q7gjL1wKTiP8StkLy0NIkkCiyew/find-things?type=https://w3id.org/kpxl/gen/terms/Event" . . . . "short ID suffix for the poster" . . "URL to poster, DOI, or related resource" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "title of the poster" . . "topic or subject of the poster" . "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .