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The Workshop on Citation Extraction and Parsing (CiteX 2026) provides an interdisciplinary forum for researchers, developers and practitioners to discuss current advances in the automated detection, structuring and provision of bibliographic references. https://w3id.org/spaces/citex/2026 http://schema.org/endDate 2026-05-29T17:00:00.0+02:00 https://w3id.org/spaces/citex/2026 http://schema.org/startDate 2026-05-28T09:00:00.0+02:00 https://w3id.org/spaces/citex/2026 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Event https://w3id.org/spaces/citex/2026 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Space https://w3id.org/spaces/citex/2026 http://www.w3.org/2000/01/rdf-schema#label CiteX 2026: Workshop on Citation Extraction and Parsing https://w3id.org/spaces/citex/2026 http://www.w3.org/2002/07/owl#sameAs https://www.dipf.de/en/dipf-news/events/workshop-citex-2026-citation-extraction-and-parsing 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http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAypbrEGz0lVRglq35_Gj6pmXLg3M2G_A5rUszVPg2RJk/assertion https://w3id.org/spaces/nanopub/nanosessions/session31 http://purl.org/dc/terms/description In this session, we will take a deep dive into the core components of the nanopublication ecosystem (Registry, Query, Nanodash) and explore how they interact. Through practical examples and real-world use cases, we will illustrate how this ecosystem enables decentralized, verifiable, and reusable knowledge publishing. The session will conclude with an open discussion in which participants can engage with the presented use cases, share experiences, and explore future possibilities within the nanopublication ecosystem. https://w3id.org/spaces/nanopub/nanosessions/session31 http://schema.org/endDate 2026-05-05T17:00:00.0+02:00 https://w3id.org/spaces/nanopub/nanosessions/session31 http://schema.org/startDate 2026-05-05T16:00:00.0+02:00 https://w3id.org/spaces/nanopub/nanosessions/session31 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Event https://w3id.org/spaces/nanopub/nanosessions/session31 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Space https://w3id.org/spaces/nanopub/nanosessions/session31 http://www.w3.org/2000/01/rdf-schema#label Nano Session #31 https://w3id.org/spaces/nanopub/nanosessions/session31 https://w3id.org/kpxl/gen/terms/hasAdmin https://orcid.org/0000-0001-8492-0354 https://w3id.org/spaces/nanopub/nanosessions/session31 https://w3id.org/kpxl/gen/terms/hasAdmin https://orcid.org/0000-0002-1267-0234 https://w3id.org/spaces/nanopub/nanosessions/session31 https://w3id.org/kpxl/gen/terms/hasAdmin https://orcid.org/0009-0009-0118-9195 https://w3id.org/np/RAypbrEGz0lVRglq35_Gj6pmXLg3M2G_A5rUszVPg2RJk/provenance https://w3id.org/np/RAypbrEGz0lVRglq35_Gj6pmXLg3M2G_A5rUszVPg2RJk/assertion http://www.w3.org/ns/prov#wasAttributedTo https://orcid.org/0009-0009-0118-9195 https://w3id.org/np/RAypbrEGz0lVRglq35_Gj6pmXLg3M2G_A5rUszVPg2RJk/pubinfo https://orcid.org/0009-0009-0118-9195 http://xmlns.com/foaf/0.1/name Virginia Balseiro https://w3id.org/np/RAypbrEGz0lVRglq35_Gj6pmXLg3M2G_A5rUszVPg2RJk http://purl.org/dc/terms/created 2026-04-21T13:12:31.271Z https://w3id.org/np/RAypbrEGz0lVRglq35_Gj6pmXLg3M2G_A5rUszVPg2RJk http://purl.org/dc/terms/creator https://orcid.org/0009-0009-0118-9195 https://w3id.org/np/RAypbrEGz0lVRglq35_Gj6pmXLg3M2G_A5rUszVPg2RJk 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http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAUq4wUTUxN-4XWAo5-m_F0OESnyGl740806dXgoB0pHQ/assertion https://w3id.org/spaces/knowledgepixels/nanoarguments http://purl.org/dc/terms/description <p>Global, federated graph of scientific claims as LinkedData</p> <p>Scientific knowledge is currently scattered across papers, repositories, and disconnected platforms, with no structured way to trace how claims connect to evidence or how arguments develop. Nanoarguments builds a framework and tools for creating, browsing, and contributing to a global, federated graph of scientific discourse and evidence. Researchers and their communities can collaboratively structure claims, evidence chains, and discussion as nanopublications, which are small, cryptographically signed Linked Data snippets with precise provenance and authorship, published to a decentralized peer-to-peer network. The project builds upon the Nanodash interface to help users browse, edit, and aggregate discourse and evidence graphs, and integrates with dokieli to enable in-context authoring of nanopublications as inline annotations while reading or writing a document. A bidirectional ActivityPub connector bridges the nanopublication network and the fediverse, allowing discourse threads to start as social exchanges and crystallize into persistent, machine-readable evidence records. The project will be piloted with early adopter research groups in discourse and evidence modeling. All components will be released as open-source modules that other systems can build upon.</p> https://w3id.org/spaces/knowledgepixels/nanoarguments http://schema.org/startDate 2026-04-09T00:00:00.0+02:00 https://w3id.org/spaces/knowledgepixels/nanoarguments http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Project https://w3id.org/spaces/knowledgepixels/nanoarguments http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Space https://w3id.org/spaces/knowledgepixels/nanoarguments http://www.w3.org/2000/01/rdf-schema#label Nanoarguments https://w3id.org/spaces/knowledgepixels/nanoarguments http://www.w3.org/2002/07/owl#sameAs https://nlnet.nl/project/Nanoarguments/ https://w3id.org/spaces/knowledgepixels/nanoarguments https://w3id.org/kpxl/gen/terms/hasAdmin https://orcid.org/0000-0001-8492-0354 https://w3id.org/spaces/knowledgepixels/nanoarguments https://w3id.org/kpxl/gen/terms/hasAdmin https://orcid.org/0000-0002-1267-0234 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http://purl.org/dc/terms/description <div> Agenda: <ul> <li>Mitja Zdouc: Natural Product Research Data: from one star to five stars. <a href="https://zdouc-lab.github.io/zdouc-lab-website/">https://zdouc-lab.github.io/zdouc-lab-website/</a></li> <li>Roberto Pizzolotto: Biodiversity structured information, from species list to network through nanopublications</li> </ul> <ul> <li><a href="https://vu-live.zoom.us/j/91057846609?pwd=ON5eF2Ovs1fY8KQUCnEvSM2Eltfod1.1">Zoom link</a></li> <li><a href="https://docs.google.com/document/d/1_vL-hxsHGcy85g7EIUdLesztXFofQ9QW4VdZG3K5J8g/edit#">Notes</a></li> </ul> </div> https://w3id.org/spaces/nanopub/nanosessions/session30 http://schema.org/endDate 2026-04-14T17:00:00.0+02:00 https://w3id.org/spaces/nanopub/nanosessions/session30 http://schema.org/startDate 2026-04-14T16:00:00.0+02:00 https://w3id.org/spaces/nanopub/nanosessions/session30 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Event 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critical for interpreting scientifically relevant observations but currently hampered by poor consistency and documentation. These errors arise from diverse sources, including linguistic ambiguity, computational bugs, systematic biases, unstable measurements and missing data. Despite its central role in quality control, data integration, and decision-making, uncertainty is often underreported or informally expressed. Nanopublications offer an ideal, structured, and machine-actionable framework to address this challenge by providing a scalable solution that transcends traditional, narrative-based methods. Their design combines precise assertions with rich provenance, allowing researchers to clearly state an observation or claim (e.g., regarding an error or uncertain measurement) while simultaneously linking to its full supporting history and context. Expressed as interoperable RDF triples, nanopublications are openly published on a decentralized network as FAIR Digital Objects, making this essential information easily discoverable, integratable, and processable by automated systems across various scientific domains. The Metabolomics and Analytics Center (MAC) at Leiden Academic Center for Drug Research is developing a nanopublication-based reporting framework to capture three critical uncertainty types inherent in high-throughput mass spectrometry data: those related to detection limits/sensitivity, physical/chemical instabilities (such as evaporation or oxidation), and ambiguities from structural isomers. This hackathon will leverage the MAC's developments to explore nanopublications as a universal, scalable, and machine-actionable mechanism for communicating errors, uncertainty, and related concepts across scientific domains, using metabolomics as a core case study. Participants will be introduced to nanopublication principles and decentralized publication infrastructures through hands-on experience with user-friendly interfaces and templates. To lower barriers to participation, no technical prerequisites are assumed; participants only need to authenticate via ORCID in a browser [so come prepared with your ORCID credentials at hand!]. We'll show metabolomics examples from MAC that include uncertainty and error reporting. Participants are encouraged to bring their own examples of errors, uncertainties, and data quality issues from any scholarly domain. 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Session title: Making Errors and Uncertainty FAIR: A Nanopublications Hackathon for Machine-Actionable Scientific Error Reporting Session abstract: Communicating and reusing estimations of uncertainty and error is critical for interpreting scientifically relevant observations but currently hampered by poor consistency and documentation. These errors arise from diverse sources, including linguistic ambiguity, computational bugs, systematic biases, unstable measurements and missing data. Despite its central role in quality control, data integration, and decision-making, uncertainty is often underreported or informally expressed. Nanopublications offer an ideal, structured, and machine-actionable framework to address this challenge by providing a scalable solution that transcends traditional, narrative-based methods. Their design combines precise assertions with rich provenance, allowing researchers to clearly state an observation or claim (e.g., regarding an error or uncertain measurement) while simultaneously linking to its full supporting history and context. Expressed as interoperable RDF triples, nanopublications are openly published on a decentralized network as FAIR Digital Objects, making this essential information easily discoverable, integratable, and processable by automated systems across various scientific domains. The Metabolomics and Analytics Center (MAC) at Leiden Academic Center for Drug Research is developing a nanopublication-based reporting framework to capture three critical uncertainty types inherent in high-throughput mass spectrometry data: those related to detection limits/sensitivity, physical/chemical instabilities (such as evaporation or oxidation), and ambiguities from structural isomers. This hackathon will leverage the MAC's developments to explore nanopublications as a universal, scalable, and machine-actionable mechanism for communicating errors, uncertainty, and related concepts across scientific domains, using metabolomics as a core case study. Participants will be introduced to nanopublication principles and decentralized publication infrastructures through hands-on experience with user-friendly interfaces and templates. To lower barriers to participation, no technical prerequisites are assumed; participants only need to authenticate via ORCID in a browser [so come prepared with your ORCID credentials at hand!]. We'll show metabolomics examples from MAC that include uncertainty and error reporting. Participants are encouraged to bring their own examples of errors, uncertainties, and data quality issues from any scholarly domain. 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